Gene : Seita.1G169700 S. italica v2.2
Defline:  (1 of 1) PTHR18968:SF112 - ACETOLACTATE SYNTHASE, CHLOROPLASTIC Genomic Order:  1697
Name:  ? Seita.1G169700 Secondary Identifier:  ? PAC:32698221
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica BRANCHED-CHAIN-AA-SYN-PWY Setaria italica pathologic  
Sitalica ILEUSYN-PWY Setaria italica pathologic  
Sitalica PWY-3001 Setaria italica pathologic  
Sitalica VALSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G169700 0.5kb upstream 0.5kb upstream 3312 true scaffold_1: 24269406-24272717 Setaria italica
Seita.1G169700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 24269406-24269905 Setaria italica
Seita.1G169700 0.5kb downstream 0.5kb downstream 3312 true scaffold_1: 24269906-24273217 Setaria italica
Seita.1G169700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 24272718-24273217 Setaria italica
Seita.1G169700 1.0kb upstream 1.0kb upstream 3812 true scaffold_1: 24268906-24272717 Setaria italica
Seita.1G169700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 24268906-24269905 Setaria italica
Seita.1G169700 1.0kb downstream 1.0kb downstream 3812 true scaffold_1: 24269906-24273717 Setaria italica
Seita.1G169700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 24272718-24273717 Setaria italica
Seita.1G169700 2.0kb upstream 2.0kb upstream 4812 true scaffold_1: 24267906-24272717 Setaria italica
Seita.1G169700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 24267906-24269905 Setaria italica
Seita.1G169700 2.0kb downstream 2.0kb downstream 4812 true scaffold_1: 24269906-24274717 Setaria italica
Seita.1G169700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 24272718-24274717 Setaria italica
Seita.1G169700 5.0kb upstream 5.0kb upstream 7812 true scaffold_1: 24264906-24272717 Setaria italica
Seita.1G169700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 24264906-24269905 Setaria italica
Seita.1G169700 5.0kb downstream 5.0kb downstream 7812 true scaffold_1: 24269906-24277717 Setaria italica
Seita.1G169700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 24272718-24277717 Setaria italica
Seita.1G169700 10.0kb upstream 10.0kb upstream 12812 true scaffold_1: 24259906-24272717 Setaria italica
Seita.1G169700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 24259906-24269905 Setaria italica
Seita.1G169700 10.0kb downstream 10.0kb downstream 12812 true scaffold_1: 24269906-24282717 Setaria italica
Seita.1G169700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 24272718-24282717 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189748 5267 Panicoideae View MSA
124578356 5269 Grass View MSA
122042643 5273 Angiosperm View MSA
121346996 5274 Embryophyte View MSA
123424213 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.87     High  
cufflinks 47.56     High  
cufflinks 51.953     High  
cufflinks 49.095     High  
cufflinks 69.095     High High
cufflinks 38.844     High  
cufflinks 63.101     High  
cufflinks 50.373     High  
cufflinks 66.003     High  
cufflinks 47.408     High  
cufflinks 55.091     High  
cufflinks 29.346     High Low
cufflinks 21.59     High Low
cufflinks 39.758     High  
cufflinks 35.355     High  
cufflinks 73.506     High High
cufflinks 40.286     High  
cufflinks 101.425     High High
cufflinks 45.56     High  
cufflinks 35.241     High  

0 Strain