Gene : Seita.1G173100 S. italica v2.2
Defline:  (1 of 1) KOG2164 - Predicted E3 ubiquitin ligase Genomic Order:  1731
Name:  ? Seita.1G173100 Secondary Identifier:  ? PAC:32696461
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G173100 0.5kb upstream 0.5kb upstream 7835 true scaffold_1: 24902202-24910036 Setaria italica
Seita.1G173100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 24909537-24910036 Setaria italica
Seita.1G173100 0.5kb downstream 0.5kb downstream 7835 true scaffold_1: 24901702-24909536 Setaria italica
Seita.1G173100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 24901702-24902201 Setaria italica
Seita.1G173100 1.0kb upstream 1.0kb upstream 8335 true scaffold_1: 24902202-24910536 Setaria italica
Seita.1G173100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 24909537-24910536 Setaria italica
Seita.1G173100 1.0kb downstream 1.0kb downstream 8335 true scaffold_1: 24901202-24909536 Setaria italica
Seita.1G173100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 24901202-24902201 Setaria italica
Seita.1G173100 2.0kb upstream 2.0kb upstream 9335 true scaffold_1: 24902202-24911536 Setaria italica
Seita.1G173100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 24909537-24911536 Setaria italica
Seita.1G173100 2.0kb downstream 2.0kb downstream 9335 true scaffold_1: 24900202-24909536 Setaria italica
Seita.1G173100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 24900202-24902201 Setaria italica
Seita.1G173100 5.0kb upstream 5.0kb upstream 12335 true scaffold_1: 24902202-24914536 Setaria italica
Seita.1G173100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 24909537-24914536 Setaria italica
Seita.1G173100 5.0kb downstream 5.0kb downstream 12335 true scaffold_1: 24897202-24909536 Setaria italica
Seita.1G173100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 24897202-24902201 Setaria italica
Seita.1G173100 10.0kb upstream 10.0kb upstream 17335 true scaffold_1: 24902202-24919536 Setaria italica
Seita.1G173100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 24909537-24919536 Setaria italica
Seita.1G173100 10.0kb downstream 10.0kb downstream 17335 true scaffold_1: 24892202-24909536 Setaria italica
Seita.1G173100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 24892202-24902201 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175493 5267 Panicoideae View MSA
124577375 5269 Grass View MSA
122042542 5273 Angiosperm View MSA
121344560 5274 Embryophyte View MSA
123423758 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.081        
cufflinks 6.824        
cufflinks 9.981       High
cufflinks 8.722        
cufflinks 7.41        
cufflinks 6.505        
cufflinks 6.148        
cufflinks 4.766       Low
cufflinks 5.633       Low
cufflinks 5.434       Low
cufflinks 7.575        
cufflinks 10.77       High
cufflinks 6.992        
cufflinks 7.063        
cufflinks 7.868        
cufflinks 7.984        
cufflinks 6.951        
cufflinks 11.946     High High
cufflinks 8.485        
cufflinks 7.97        

0 Strain