Gene : Seita.1G172500 S. italica v2.2
Defline:  (1 of 4) KOG1118 - Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation Genomic Order:  1725
Name:  ? Seita.1G172500 Secondary Identifier:  ? PAC:32695262
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G172500 0.5kb upstream 0.5kb upstream 7093 true scaffold_1: 24767339-24774431 Setaria italica
Seita.1G172500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 24773932-24774431 Setaria italica
Seita.1G172500 0.5kb downstream 0.5kb downstream 7093 true scaffold_1: 24766839-24773931 Setaria italica
Seita.1G172500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 24766839-24767338 Setaria italica
Seita.1G172500 1.0kb upstream 1.0kb upstream 7593 true scaffold_1: 24767339-24774931 Setaria italica
Seita.1G172500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 24773932-24774931 Setaria italica
Seita.1G172500 1.0kb downstream 1.0kb downstream 7593 true scaffold_1: 24766339-24773931 Setaria italica
Seita.1G172500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 24766339-24767338 Setaria italica
Seita.1G172500 2.0kb upstream 2.0kb upstream 8593 true scaffold_1: 24767339-24775931 Setaria italica
Seita.1G172500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 24773932-24775931 Setaria italica
Seita.1G172500 2.0kb downstream 2.0kb downstream 8593 true scaffold_1: 24765339-24773931 Setaria italica
Seita.1G172500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 24765339-24767338 Setaria italica
Seita.1G172500 5.0kb upstream 5.0kb upstream 11593 true scaffold_1: 24767339-24778931 Setaria italica
Seita.1G172500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 24773932-24778931 Setaria italica
Seita.1G172500 5.0kb downstream 5.0kb downstream 11593 true scaffold_1: 24762339-24773931 Setaria italica
Seita.1G172500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 24762339-24767338 Setaria italica
Seita.1G172500 10.0kb upstream 10.0kb upstream 16593 true scaffold_1: 24767339-24783931 Setaria italica
Seita.1G172500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 24773932-24783931 Setaria italica
Seita.1G172500 10.0kb downstream 10.0kb downstream 16593 true scaffold_1: 24757339-24773931 Setaria italica
Seita.1G172500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 24757339-24767338 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190124 5267 Panicoideae View MSA
124577984 5269 Grass View MSA
122041909 5273 Angiosperm View MSA
121348701 5274 Embryophyte View MSA
123380980 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.528        
cufflinks 2.086        
cufflinks 1.027       Low
cufflinks 1.346       Low
cufflinks 3.097        
cufflinks 1.866        
cufflinks 4.441        
cufflinks 1.105       Low
cufflinks 4.347        
cufflinks 2.817        
cufflinks 3.09        
cufflinks 6.76       High
cufflinks 3.022        
cufflinks 6.593       High
cufflinks 4.222        
cufflinks 0.968       Low
cufflinks 2.03        
cufflinks 3.399        
cufflinks 1.825        
cufflinks 3.755        

0 Strain