Gene : Seita.1G181300 S. italica v2.2
Defline:  (1 of 2) PTHR23088:SF26 - N-CARBAMOYLPUTRESCINE AMIDASE Genomic Order:  1813
Name:  ? Seita.1G181300 Secondary Identifier:  ? PAC:32694381
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica POLYAMINSYN3-PWY Setaria italica pathologic  
Sitalica PWY-43 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G181300 0.5kb upstream 0.5kb upstream 4557 true scaffold_1: 26079702-26084258 Setaria italica
Seita.1G181300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 26079702-26080201 Setaria italica
Seita.1G181300 0.5kb downstream 0.5kb downstream 4557 true scaffold_1: 26080202-26084758 Setaria italica
Seita.1G181300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 26084259-26084758 Setaria italica
Seita.1G181300 1.0kb upstream 1.0kb upstream 5057 true scaffold_1: 26079202-26084258 Setaria italica
Seita.1G181300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 26079202-26080201 Setaria italica
Seita.1G181300 1.0kb downstream 1.0kb downstream 5057 true scaffold_1: 26080202-26085258 Setaria italica
Seita.1G181300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 26084259-26085258 Setaria italica
Seita.1G181300 2.0kb upstream 2.0kb upstream 6057 true scaffold_1: 26078202-26084258 Setaria italica
Seita.1G181300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 26078202-26080201 Setaria italica
Seita.1G181300 2.0kb downstream 2.0kb downstream 6057 true scaffold_1: 26080202-26086258 Setaria italica
Seita.1G181300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 26084259-26086258 Setaria italica
Seita.1G181300 5.0kb upstream 5.0kb upstream 9057 true scaffold_1: 26075202-26084258 Setaria italica
Seita.1G181300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 26075202-26080201 Setaria italica
Seita.1G181300 5.0kb downstream 5.0kb downstream 9057 true scaffold_1: 26080202-26089258 Setaria italica
Seita.1G181300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 26084259-26089258 Setaria italica
Seita.1G181300 10.0kb upstream 10.0kb upstream 14057 true scaffold_1: 26070202-26084258 Setaria italica
Seita.1G181300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 26070202-26080201 Setaria italica
Seita.1G181300 10.0kb downstream 10.0kb downstream 14057 true scaffold_1: 26080202-26094258 Setaria italica
Seita.1G181300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 26084259-26094258 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190715 5267 Panicoideae View MSA
124580285 5269 Grass View MSA
122048045 5273 Angiosperm View MSA
121345187 5274 Embryophyte View MSA
123425412 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.439        
cufflinks 12.668        
cufflinks 6.627        
cufflinks 5.51       Low
cufflinks 3.577       Low
cufflinks 13.39     High  
cufflinks 6.303        
cufflinks 10.379        
cufflinks 6.546        
cufflinks 17.086     High  
cufflinks 16.74     High  
cufflinks 28.397     High High
cufflinks 27.621     High High
cufflinks 9.79        
cufflinks 23.255     High High
cufflinks 4.949       Low
cufflinks 26.414     High High
cufflinks 6.73        
cufflinks 7.939        
cufflinks 28.007     High High

0 Strain