Gene : Seita.1G181400 S. italica v2.2
Defline:  (1 of 11) PF11250 - Fantastic Four meristem regulator (FAF) Genomic Order:  1814
Name:  ? Seita.1G181400 Secondary Identifier:  ? PAC:32698045
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G181400 0.5kb upstream 0.5kb upstream 1653 true scaffold_1: 26084322-26085974 Setaria italica
Seita.1G181400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 26085475-26085974 Setaria italica
Seita.1G181400 0.5kb downstream 0.5kb downstream 1653 true scaffold_1: 26083822-26085474 Setaria italica
Seita.1G181400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 26083822-26084321 Setaria italica
Seita.1G181400 1.0kb upstream 1.0kb upstream 2153 true scaffold_1: 26084322-26086474 Setaria italica
Seita.1G181400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 26085475-26086474 Setaria italica
Seita.1G181400 1.0kb downstream 1.0kb downstream 2153 true scaffold_1: 26083322-26085474 Setaria italica
Seita.1G181400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 26083322-26084321 Setaria italica
Seita.1G181400 2.0kb upstream 2.0kb upstream 3153 true scaffold_1: 26084322-26087474 Setaria italica
Seita.1G181400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 26085475-26087474 Setaria italica
Seita.1G181400 2.0kb downstream 2.0kb downstream 3153 true scaffold_1: 26082322-26085474 Setaria italica
Seita.1G181400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 26082322-26084321 Setaria italica
Seita.1G181400 5.0kb upstream 5.0kb upstream 6153 true scaffold_1: 26084322-26090474 Setaria italica
Seita.1G181400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 26085475-26090474 Setaria italica
Seita.1G181400 5.0kb downstream 5.0kb downstream 6153 true scaffold_1: 26079322-26085474 Setaria italica
Seita.1G181400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 26079322-26084321 Setaria italica
Seita.1G181400 10.0kb upstream 10.0kb upstream 11153 true scaffold_1: 26084322-26095474 Setaria italica
Seita.1G181400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 26085475-26095474 Setaria italica
Seita.1G181400 10.0kb downstream 10.0kb downstream 11153 true scaffold_1: 26074322-26085474 Setaria italica
Seita.1G181400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 26074322-26084321 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196729 5267 Panicoideae View MSA
124575250 5269 Grass View MSA
122048900 5273 Angiosperm View MSA
121311160 5274 Embryophyte View MSA
123348494 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.11     Low Low
cufflinks 0.192        
cufflinks 0.372        
cufflinks 0.305        
cufflinks 0.228        
cufflinks 0.341        
cufflinks 0.284        
cufflinks 0.557       High
cufflinks 0.236        
cufflinks 0.312     Low  
cufflinks 0.104     Low Low
cufflinks 0.286        
cufflinks 0.117     Low Low
cufflinks 1.593       High
cufflinks 0.061     Low Low
cufflinks 0.43        
cufflinks 0.17        
cufflinks 0.375        
cufflinks 0.615       High
cufflinks 0.178        

0 Strain