Gene : Seita.1G179400 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1794
Name:  ? Seita.1G179400 Secondary Identifier:  ? PAC:32696733
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G179400 0.5kb upstream 0.5kb upstream 2897 true scaffold_1: 25809585-25812481 Setaria italica
Seita.1G179400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 25811982-25812481 Setaria italica
Seita.1G179400 0.5kb downstream 0.5kb downstream 2897 true scaffold_1: 25809085-25811981 Setaria italica
Seita.1G179400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 25809085-25809584 Setaria italica
Seita.1G179400 1.0kb upstream 1.0kb upstream 3397 true scaffold_1: 25809585-25812981 Setaria italica
Seita.1G179400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 25811982-25812981 Setaria italica
Seita.1G179400 1.0kb downstream 1.0kb downstream 3397 true scaffold_1: 25808585-25811981 Setaria italica
Seita.1G179400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 25808585-25809584 Setaria italica
Seita.1G179400 2.0kb upstream 2.0kb upstream 4397 true scaffold_1: 25809585-25813981 Setaria italica
Seita.1G179400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 25811982-25813981 Setaria italica
Seita.1G179400 2.0kb downstream 2.0kb downstream 4397 true scaffold_1: 25807585-25811981 Setaria italica
Seita.1G179400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 25807585-25809584 Setaria italica
Seita.1G179400 5.0kb upstream 5.0kb upstream 7397 true scaffold_1: 25809585-25816981 Setaria italica
Seita.1G179400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 25811982-25816981 Setaria italica
Seita.1G179400 5.0kb downstream 5.0kb downstream 7397 true scaffold_1: 25804585-25811981 Setaria italica
Seita.1G179400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 25804585-25809584 Setaria italica
Seita.1G179400 10.0kb upstream 10.0kb upstream 12397 true scaffold_1: 25809585-25821981 Setaria italica
Seita.1G179400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 25811982-25821981 Setaria italica
Seita.1G179400 10.0kb downstream 10.0kb downstream 12397 true scaffold_1: 25799585-25811981 Setaria italica
Seita.1G179400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 25799585-25809584 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184279 5267 Panicoideae View MSA
124573292 5269 Grass View MSA
122049070 5273 Angiosperm View MSA
121311235 5274 Embryophyte View MSA
123348556 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.261        
cufflinks 1.322        
cufflinks 0.697        
cufflinks 0.207        
cufflinks 1.416        
cufflinks 1.189        
cufflinks 2.638        
cufflinks 1.951        
cufflinks 3.07        
cufflinks 0.762        
cufflinks 0.911        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.056     Low Low
cufflinks 1.004        
cufflinks 0.005     Low Low
cufflinks 2.549        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.518        
cufflinks 0.217        
cufflinks 0.007     Low Low

0 Strain