Gene : Seita.1G180000 S. italica v2.2
Defline:  (1 of 1) PTHR10459:SF54 - POLY [ADP-RIBOSE] POLYMERASE 3 Genomic Order:  1800
Name:  ? Seita.1G180000 Secondary Identifier:  ? PAC:32694340
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G180000 0.5kb upstream 0.5kb upstream 8319 true scaffold_1: 25856188-25864506 Setaria italica
Seita.1G180000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 25864007-25864506 Setaria italica
Seita.1G180000 0.5kb downstream 0.5kb downstream 8319 true scaffold_1: 25855688-25864006 Setaria italica
Seita.1G180000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 25855688-25856187 Setaria italica
Seita.1G180000 1.0kb upstream 1.0kb upstream 8819 true scaffold_1: 25856188-25865006 Setaria italica
Seita.1G180000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 25864007-25865006 Setaria italica
Seita.1G180000 1.0kb downstream 1.0kb downstream 8819 true scaffold_1: 25855188-25864006 Setaria italica
Seita.1G180000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 25855188-25856187 Setaria italica
Seita.1G180000 2.0kb upstream 2.0kb upstream 9819 true scaffold_1: 25856188-25866006 Setaria italica
Seita.1G180000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 25864007-25866006 Setaria italica
Seita.1G180000 2.0kb downstream 2.0kb downstream 9819 true scaffold_1: 25854188-25864006 Setaria italica
Seita.1G180000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 25854188-25856187 Setaria italica
Seita.1G180000 5.0kb upstream 5.0kb upstream 12819 true scaffold_1: 25856188-25869006 Setaria italica
Seita.1G180000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 25864007-25869006 Setaria italica
Seita.1G180000 5.0kb downstream 5.0kb downstream 12819 true scaffold_1: 25851188-25864006 Setaria italica
Seita.1G180000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 25851188-25856187 Setaria italica
Seita.1G180000 10.0kb upstream 10.0kb upstream 17819 true scaffold_1: 25856188-25874006 Setaria italica
Seita.1G180000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 25864007-25874006 Setaria italica
Seita.1G180000 10.0kb downstream 10.0kb downstream 17819 true scaffold_1: 25846188-25864006 Setaria italica
Seita.1G180000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 25846188-25856187 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026518 5273 Angiosperm View MSA
122188969 5267 Panicoideae View MSA
124573397 5269 Grass View MSA
121348135 5274 Embryophyte View MSA
123380738 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.472        
cufflinks 2.845       High
cufflinks 1.296        
cufflinks 1.056        
cufflinks 1.171        
cufflinks 1.97        
cufflinks 1.4        
cufflinks 1.767        
cufflinks 1.771        
cufflinks 0.673       Low
cufflinks 2.742       High
cufflinks 0.823       Low
cufflinks 1.733        
cufflinks 1.165        
cufflinks 0.973        
cufflinks 1.829        
cufflinks 1.126        
cufflinks 1.127        
cufflinks 0.764       Low
cufflinks 1.068        

0 Strain