Gene : Seita.1G183700 S. italica v2.2
Defline:  (1 of 1) PF00004//PF07728//PF10431 - ATPase family associated with various cellular activities (AAA) (AAA) // AAA domain (dynein-related subfamily) (AAA_5) // C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) Genomic Order:  1837
Name:  ? Seita.1G183700 Secondary Identifier:  ? PAC:32695361
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G183700 0.5kb upstream 0.5kb upstream 5824 true scaffold_1: 26386451-26392274 Setaria italica
Seita.1G183700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 26386451-26386950 Setaria italica
Seita.1G183700 0.5kb downstream 0.5kb downstream 5824 true scaffold_1: 26386951-26392774 Setaria italica
Seita.1G183700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 26392275-26392774 Setaria italica
Seita.1G183700 1.0kb upstream 1.0kb upstream 6324 true scaffold_1: 26385951-26392274 Setaria italica
Seita.1G183700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 26385951-26386950 Setaria italica
Seita.1G183700 1.0kb downstream 1.0kb downstream 6324 true scaffold_1: 26386951-26393274 Setaria italica
Seita.1G183700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 26392275-26393274 Setaria italica
Seita.1G183700 2.0kb upstream 2.0kb upstream 7324 true scaffold_1: 26384951-26392274 Setaria italica
Seita.1G183700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 26384951-26386950 Setaria italica
Seita.1G183700 2.0kb downstream 2.0kb downstream 7324 true scaffold_1: 26386951-26394274 Setaria italica
Seita.1G183700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 26392275-26394274 Setaria italica
Seita.1G183700 5.0kb upstream 5.0kb upstream 10324 true scaffold_1: 26381951-26392274 Setaria italica
Seita.1G183700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 26381951-26386950 Setaria italica
Seita.1G183700 5.0kb downstream 5.0kb downstream 10324 true scaffold_1: 26386951-26397274 Setaria italica
Seita.1G183700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 26392275-26397274 Setaria italica
Seita.1G183700 10.0kb upstream 10.0kb upstream 15324 true scaffold_1: 26376951-26392274 Setaria italica
Seita.1G183700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 26376951-26386950 Setaria italica
Seita.1G183700 10.0kb downstream 10.0kb downstream 15324 true scaffold_1: 26386951-26402274 Setaria italica
Seita.1G183700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 26392275-26402274 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193767 5267 Panicoideae View MSA
124589639 5269 Grass View MSA
122050456 5273 Angiosperm View MSA
121347252 5274 Embryophyte View MSA
123425862 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain