Gene : Seita.1G182000 S. italica v2.2
Defline:  (1 of 1) PTHR33083:SF5 - POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN Genomic Order:  1820
Name:  ? Seita.1G182000 Secondary Identifier:  ? PAC:32696546
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G182000 0.5kb upstream 0.5kb upstream 1262 true scaffold_1: 26160144-26161405 Setaria italica
Seita.1G182000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 26160144-26160643 Setaria italica
Seita.1G182000 0.5kb downstream 0.5kb downstream 1262 true scaffold_1: 26160644-26161905 Setaria italica
Seita.1G182000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 26161406-26161905 Setaria italica
Seita.1G182000 1.0kb upstream 1.0kb upstream 1762 true scaffold_1: 26159644-26161405 Setaria italica
Seita.1G182000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 26159644-26160643 Setaria italica
Seita.1G182000 1.0kb downstream 1.0kb downstream 1762 true scaffold_1: 26160644-26162405 Setaria italica
Seita.1G182000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 26161406-26162405 Setaria italica
Seita.1G182000 2.0kb upstream 2.0kb upstream 2762 true scaffold_1: 26158644-26161405 Setaria italica
Seita.1G182000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 26158644-26160643 Setaria italica
Seita.1G182000 2.0kb downstream 2.0kb downstream 2762 true scaffold_1: 26160644-26163405 Setaria italica
Seita.1G182000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 26161406-26163405 Setaria italica
Seita.1G182000 5.0kb upstream 5.0kb upstream 5762 true scaffold_1: 26155644-26161405 Setaria italica
Seita.1G182000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 26155644-26160643 Setaria italica
Seita.1G182000 5.0kb downstream 5.0kb downstream 5762 true scaffold_1: 26160644-26166405 Setaria italica
Seita.1G182000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 26161406-26166405 Setaria italica
Seita.1G182000 10.0kb upstream 10.0kb upstream 10762 true scaffold_1: 26150644-26161405 Setaria italica
Seita.1G182000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 26150644-26160643 Setaria italica
Seita.1G182000 10.0kb downstream 10.0kb downstream 10762 true scaffold_1: 26160644-26171405 Setaria italica
Seita.1G182000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 26161406-26171405 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184598 5267 Panicoideae View MSA
124583224 5269 Grass View MSA
122047516 5273 Angiosperm View MSA
121310750 5274 Embryophyte View MSA
123348161 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.045     Low  
cufflinks 0.875       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.755       High
cufflinks 0.036     Low  
cufflinks 0.033     Low  
cufflinks 0.076     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain