Gene : Seita.1G193800 S. italica v2.2
Defline:  (1 of 1) PTHR12864:SF14 - RAN-BINDING PROTEINS 9/10 HOMOLOG Genomic Order:  1938
Name:  ? Seita.1G193800 Secondary Identifier:  ? PAC:32694115
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G193800 0.5kb upstream 0.5kb upstream 6663 true scaffold_1: 27570899-27577561 Setaria italica
Seita.1G193800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27577062-27577561 Setaria italica
Seita.1G193800 0.5kb downstream 0.5kb downstream 6663 true scaffold_1: 27570399-27577061 Setaria italica
Seita.1G193800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27570399-27570898 Setaria italica
Seita.1G193800 1.0kb upstream 1.0kb upstream 7163 true scaffold_1: 27570899-27578061 Setaria italica
Seita.1G193800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27577062-27578061 Setaria italica
Seita.1G193800 1.0kb downstream 1.0kb downstream 7163 true scaffold_1: 27569899-27577061 Setaria italica
Seita.1G193800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27569899-27570898 Setaria italica
Seita.1G193800 2.0kb upstream 2.0kb upstream 8163 true scaffold_1: 27570899-27579061 Setaria italica
Seita.1G193800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27577062-27579061 Setaria italica
Seita.1G193800 2.0kb downstream 2.0kb downstream 8163 true scaffold_1: 27568899-27577061 Setaria italica
Seita.1G193800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27568899-27570898 Setaria italica
Seita.1G193800 5.0kb upstream 5.0kb upstream 11163 true scaffold_1: 27570899-27582061 Setaria italica
Seita.1G193800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27577062-27582061 Setaria italica
Seita.1G193800 5.0kb downstream 5.0kb downstream 11163 true scaffold_1: 27565899-27577061 Setaria italica
Seita.1G193800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27565899-27570898 Setaria italica
Seita.1G193800 10.0kb upstream 10.0kb upstream 16163 true scaffold_1: 27570899-27587061 Setaria italica
Seita.1G193800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27577062-27587061 Setaria italica
Seita.1G193800 10.0kb downstream 10.0kb downstream 16163 true scaffold_1: 27560899-27577061 Setaria italica
Seita.1G193800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27560899-27570898 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177551 5267 Panicoideae View MSA
124580835 5269 Grass View MSA
122046700 5273 Angiosperm View MSA
121346795 5274 Embryophyte View MSA
123424255 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.605        
cufflinks 8.578        
cufflinks 8.164        
cufflinks 9.509        
cufflinks 7.086       Low
cufflinks 10.138        
cufflinks 7.4        
cufflinks 8.291        
cufflinks 6.467       Low
cufflinks 10.784        
cufflinks 9.847        
cufflinks 14.215     High High
cufflinks 17.016     High High
cufflinks 7.121       Low
cufflinks 12.008        
cufflinks 10.548        
cufflinks 10.203        
cufflinks 23.587     High High
cufflinks 7.04       Low
cufflinks 10.34        

0 Strain