Gene : Seita.1G193700 S. italica v2.2
Defline:  (1 of 1) PTHR13370 - RNA METHYLASE-RELATED Genomic Order:  1937
Name:  ? Seita.1G193700 Secondary Identifier:  ? PAC:32693958
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6829 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G193700 0.5kb upstream 0.5kb upstream 3812 true scaffold_1: 27550583-27554394 Setaria italica
Seita.1G193700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27553895-27554394 Setaria italica
Seita.1G193700 0.5kb downstream 0.5kb downstream 3812 true scaffold_1: 27550083-27553894 Setaria italica
Seita.1G193700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27550083-27550582 Setaria italica
Seita.1G193700 1.0kb upstream 1.0kb upstream 4312 true scaffold_1: 27550583-27554894 Setaria italica
Seita.1G193700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27553895-27554894 Setaria italica
Seita.1G193700 1.0kb downstream 1.0kb downstream 4312 true scaffold_1: 27549583-27553894 Setaria italica
Seita.1G193700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27549583-27550582 Setaria italica
Seita.1G193700 2.0kb upstream 2.0kb upstream 5312 true scaffold_1: 27550583-27555894 Setaria italica
Seita.1G193700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27553895-27555894 Setaria italica
Seita.1G193700 2.0kb downstream 2.0kb downstream 5312 true scaffold_1: 27548583-27553894 Setaria italica
Seita.1G193700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27548583-27550582 Setaria italica
Seita.1G193700 5.0kb upstream 5.0kb upstream 8312 true scaffold_1: 27550583-27558894 Setaria italica
Seita.1G193700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27553895-27558894 Setaria italica
Seita.1G193700 5.0kb downstream 5.0kb downstream 8312 true scaffold_1: 27545583-27553894 Setaria italica
Seita.1G193700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27545583-27550582 Setaria italica
Seita.1G193700 10.0kb upstream 10.0kb upstream 13312 true scaffold_1: 27550583-27563894 Setaria italica
Seita.1G193700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27553895-27563894 Setaria italica
Seita.1G193700 10.0kb downstream 10.0kb downstream 13312 true scaffold_1: 27540583-27553894 Setaria italica
Seita.1G193700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27540583-27550582 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182263 5267 Panicoideae View MSA
124573594 5269 Grass View MSA
122048014 5273 Angiosperm View MSA
121347099 5274 Embryophyte View MSA
123424311 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.586        
cufflinks 5.595       High
cufflinks 2.92        
cufflinks 1.352       Low
cufflinks 1.639       Low
cufflinks 6.862       High
cufflinks 2.93        
cufflinks 3.129        
cufflinks 3.864        
cufflinks 2.771        
cufflinks 3.328        
cufflinks 3.738        
cufflinks 2.894        
cufflinks 4.394        
cufflinks 5.226       High
cufflinks 2.026       Low
cufflinks 4.558        
cufflinks 2.475        
cufflinks 1.749       Low
cufflinks 5.163       High

0 Strain