Gene : Seita.1G196500 S. italica v2.2
Defline:  (1 of 4) PTHR13789:SF1 - FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN-RELATED Genomic Order:  1965
Name:  ? Seita.1G196500 Secondary Identifier:  ? PAC:32696294
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G196500 0.5kb upstream 0.5kb upstream 7758 true scaffold_1: 27772003-27779760 Setaria italica
Seita.1G196500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27779261-27779760 Setaria italica
Seita.1G196500 0.5kb downstream 0.5kb downstream 7758 true scaffold_1: 27771503-27779260 Setaria italica
Seita.1G196500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27771503-27772002 Setaria italica
Seita.1G196500 1.0kb upstream 1.0kb upstream 8258 true scaffold_1: 27772003-27780260 Setaria italica
Seita.1G196500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27779261-27780260 Setaria italica
Seita.1G196500 1.0kb downstream 1.0kb downstream 8258 true scaffold_1: 27771003-27779260 Setaria italica
Seita.1G196500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27771003-27772002 Setaria italica
Seita.1G196500 2.0kb upstream 2.0kb upstream 9258 true scaffold_1: 27772003-27781260 Setaria italica
Seita.1G196500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27779261-27781260 Setaria italica
Seita.1G196500 2.0kb downstream 2.0kb downstream 9258 true scaffold_1: 27770003-27779260 Setaria italica
Seita.1G196500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27770003-27772002 Setaria italica
Seita.1G196500 5.0kb upstream 5.0kb upstream 12258 true scaffold_1: 27772003-27784260 Setaria italica
Seita.1G196500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27779261-27784260 Setaria italica
Seita.1G196500 5.0kb downstream 5.0kb downstream 12258 true scaffold_1: 27767003-27779260 Setaria italica
Seita.1G196500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27767003-27772002 Setaria italica
Seita.1G196500 10.0kb upstream 10.0kb upstream 17258 true scaffold_1: 27772003-27789260 Setaria italica
Seita.1G196500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27779261-27789260 Setaria italica
Seita.1G196500 10.0kb downstream 10.0kb downstream 17258 true scaffold_1: 27762003-27779260 Setaria italica
Seita.1G196500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27762003-27772002 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182264 5267 Panicoideae View MSA
124465687 5269 Grass View MSA
122050321 5273 Angiosperm View MSA
123429089 5275 Viridiplantae View MSA
121311854 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.208        
cufflinks 0.363        
cufflinks 0.105        
cufflinks 0.067     Low Low
cufflinks 0.083       Low
cufflinks 0.361        
cufflinks 0.368        
cufflinks 0.336        
cufflinks 0.286        
cufflinks 0.056     Low Low
cufflinks 0.887       High
cufflinks 0.239        
cufflinks 0.613       High
cufflinks 0.083     Low Low
cufflinks 0.543       High
cufflinks 0.222        
cufflinks 0.47        
cufflinks 0.088     Low  
cufflinks 0.034     Low Low
cufflinks 0.59       High

0 Strain