Gene : Seita.1G196900 S. italica v2.2
Defline:  (1 of 4) PTHR13789:SF1 - FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN-RELATED Genomic Order:  1969
Name:  ? Seita.1G196900 Secondary Identifier:  ? PAC:32693953
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G196900 0.5kb upstream 0.5kb upstream 2610 true scaffold_1: 27798591-27801200 Setaria italica
Seita.1G196900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27800701-27801200 Setaria italica
Seita.1G196900 0.5kb downstream 0.5kb downstream 2610 true scaffold_1: 27798091-27800700 Setaria italica
Seita.1G196900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27798091-27798590 Setaria italica
Seita.1G196900 1.0kb upstream 1.0kb upstream 3110 true scaffold_1: 27798591-27801700 Setaria italica
Seita.1G196900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27800701-27801700 Setaria italica
Seita.1G196900 1.0kb downstream 1.0kb downstream 3110 true scaffold_1: 27797591-27800700 Setaria italica
Seita.1G196900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27797591-27798590 Setaria italica
Seita.1G196900 2.0kb upstream 2.0kb upstream 4110 true scaffold_1: 27798591-27802700 Setaria italica
Seita.1G196900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27800701-27802700 Setaria italica
Seita.1G196900 2.0kb downstream 2.0kb downstream 4110 true scaffold_1: 27796591-27800700 Setaria italica
Seita.1G196900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27796591-27798590 Setaria italica
Seita.1G196900 5.0kb upstream 5.0kb upstream 7110 true scaffold_1: 27798591-27805700 Setaria italica
Seita.1G196900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27800701-27805700 Setaria italica
Seita.1G196900 5.0kb downstream 5.0kb downstream 7110 true scaffold_1: 27793591-27800700 Setaria italica
Seita.1G196900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27793591-27798590 Setaria italica
Seita.1G196900 10.0kb upstream 10.0kb upstream 12110 true scaffold_1: 27798591-27810700 Setaria italica
Seita.1G196900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27800701-27810700 Setaria italica
Seita.1G196900 10.0kb downstream 10.0kb downstream 12110 true scaffold_1: 27788591-27800700 Setaria italica
Seita.1G196900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27788591-27798590 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182264 5267 Panicoideae View MSA
124465687 5269 Grass View MSA
122050321 5273 Angiosperm View MSA
123429089 5275 Viridiplantae View MSA
121311854 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.557        
cufflinks 1.069        
cufflinks 0.213       Low
cufflinks 0.267        
cufflinks 0.21       Low
cufflinks 0.977        
cufflinks 0.928        
cufflinks 0.422        
cufflinks 0.82        
cufflinks 1.397        
cufflinks 2.352        
cufflinks 3.705       High
cufflinks 2.678       High
cufflinks 0.133       Low
cufflinks 2.288        
cufflinks 0.733        
cufflinks 3.054       High
cufflinks 0.19       Low
cufflinks 0.077     Low Low
cufflinks 7.491       High

0 Strain