Gene : Seita.1G197300 S. italica v2.2
Defline:  (1 of 4) PTHR13789:SF1 - FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN-RELATED Genomic Order:  1973
Name:  ? Seita.1G197300 Secondary Identifier:  ? PAC:32694863
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G197300 0.5kb upstream 0.5kb upstream 2748 true scaffold_1: 27836414-27839161 Setaria italica
Seita.1G197300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27838662-27839161 Setaria italica
Seita.1G197300 0.5kb downstream 0.5kb downstream 2748 true scaffold_1: 27835914-27838661 Setaria italica
Seita.1G197300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27835914-27836413 Setaria italica
Seita.1G197300 1.0kb upstream 1.0kb upstream 3248 true scaffold_1: 27836414-27839661 Setaria italica
Seita.1G197300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27838662-27839661 Setaria italica
Seita.1G197300 1.0kb downstream 1.0kb downstream 3248 true scaffold_1: 27835414-27838661 Setaria italica
Seita.1G197300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27835414-27836413 Setaria italica
Seita.1G197300 2.0kb upstream 2.0kb upstream 4248 true scaffold_1: 27836414-27840661 Setaria italica
Seita.1G197300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27838662-27840661 Setaria italica
Seita.1G197300 2.0kb downstream 2.0kb downstream 4248 true scaffold_1: 27834414-27838661 Setaria italica
Seita.1G197300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27834414-27836413 Setaria italica
Seita.1G197300 5.0kb upstream 5.0kb upstream 7248 true scaffold_1: 27836414-27843661 Setaria italica
Seita.1G197300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27838662-27843661 Setaria italica
Seita.1G197300 5.0kb downstream 5.0kb downstream 7248 true scaffold_1: 27831414-27838661 Setaria italica
Seita.1G197300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27831414-27836413 Setaria italica
Seita.1G197300 10.0kb upstream 10.0kb upstream 12248 true scaffold_1: 27836414-27848661 Setaria italica
Seita.1G197300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27838662-27848661 Setaria italica
Seita.1G197300 10.0kb downstream 10.0kb downstream 12248 true scaffold_1: 27826414-27838661 Setaria italica
Seita.1G197300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27826414-27836413 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177281 5267 Panicoideae View MSA
124587498 5269 Grass View MSA
122050321 5273 Angiosperm View MSA
123429089 5275 Viridiplantae View MSA
121311854 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.213        
cufflinks 0.115     Low  
cufflinks 0.08        
cufflinks 0.047     Low Low
cufflinks 0.025     Low Low
cufflinks 0.039     Low Low
cufflinks 0.212        
cufflinks 0.088     Low  
cufflinks 0.107     Low  
cufflinks 1.125       High
cufflinks 1.191       High
cufflinks 0.371        
cufflinks 0.226        
cufflinks 1.876       High
cufflinks 0.575        
cufflinks 0.044     Low Low
cufflinks 0.328        
cufflinks 0.175        
cufflinks 0.838       High
cufflinks 0.122     Low  

0 Strain