Gene : Seita.1G195800 S. italica v2.2
Defline:  (1 of 2) 4.99.1.1 - Ferrochelatase / Protoheme ferro-lyase Genomic Order:  1958
Name:  ? Seita.1G195800 Secondary Identifier:  ? PAC:32693866
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica HEME-BIOSYNTHESIS-II Setaria italica pathologic  
Sitalica PWY-5918 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G195800 0.5kb upstream 0.5kb upstream 6594 true scaffold_1: 27717607-27724200 Setaria italica
Seita.1G195800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27723701-27724200 Setaria italica
Seita.1G195800 0.5kb downstream 0.5kb downstream 6594 true scaffold_1: 27717107-27723700 Setaria italica
Seita.1G195800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27717107-27717606 Setaria italica
Seita.1G195800 1.0kb upstream 1.0kb upstream 7094 true scaffold_1: 27717607-27724700 Setaria italica
Seita.1G195800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27723701-27724700 Setaria italica
Seita.1G195800 1.0kb downstream 1.0kb downstream 7094 true scaffold_1: 27716607-27723700 Setaria italica
Seita.1G195800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27716607-27717606 Setaria italica
Seita.1G195800 2.0kb upstream 2.0kb upstream 8094 true scaffold_1: 27717607-27725700 Setaria italica
Seita.1G195800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27723701-27725700 Setaria italica
Seita.1G195800 2.0kb downstream 2.0kb downstream 8094 true scaffold_1: 27715607-27723700 Setaria italica
Seita.1G195800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27715607-27717606 Setaria italica
Seita.1G195800 5.0kb upstream 5.0kb upstream 11094 true scaffold_1: 27717607-27728700 Setaria italica
Seita.1G195800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27723701-27728700 Setaria italica
Seita.1G195800 5.0kb downstream 5.0kb downstream 11094 true scaffold_1: 27712607-27723700 Setaria italica
Seita.1G195800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27712607-27717606 Setaria italica
Seita.1G195800 10.0kb upstream 10.0kb upstream 16094 true scaffold_1: 27717607-27733700 Setaria italica
Seita.1G195800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27723701-27733700 Setaria italica
Seita.1G195800 10.0kb downstream 10.0kb downstream 16094 true scaffold_1: 27707607-27723700 Setaria italica
Seita.1G195800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27707607-27717606 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188460 5267 Panicoideae View MSA
124571613 5269 Grass View MSA
122044162 5273 Angiosperm View MSA
121346360 5274 Embryophyte View MSA
123426598 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.713        
cufflinks 7.919        
cufflinks 55.499     High High
cufflinks 44.173     High High
cufflinks 45.406     High High
cufflinks 6.796        
cufflinks 26.699     High  
cufflinks 23.261     High  
cufflinks 21.322     High  
cufflinks 4.105        
cufflinks 6.141        
cufflinks 0.634       Low
cufflinks 1.864       Low
cufflinks 40.435     High  
cufflinks 1.133       Low
cufflinks 52.729     High High
cufflinks 0.933       Low
cufflinks 16.639     High  
cufflinks 39.657     High  
cufflinks 0.932       Low

0 Strain