Gene : Seita.1G196000 S. italica v2.2
Defline:  (1 of 2) 2.8.1.12 - Molybdopterin synthase / MPT synthase Genomic Order:  1960
Name:  ? Seita.1G196000 Secondary Identifier:  ? PAC:32696476
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6823 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G196000 0.5kb upstream 0.5kb upstream 1486 true scaffold_1: 27730716-27732201 Setaria italica
Seita.1G196000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27730716-27731215 Setaria italica
Seita.1G196000 0.5kb downstream 0.5kb downstream 1486 true scaffold_1: 27731216-27732701 Setaria italica
Seita.1G196000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27732202-27732701 Setaria italica
Seita.1G196000 1.0kb upstream 1.0kb upstream 1986 true scaffold_1: 27730216-27732201 Setaria italica
Seita.1G196000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27730216-27731215 Setaria italica
Seita.1G196000 1.0kb downstream 1.0kb downstream 1986 true scaffold_1: 27731216-27733201 Setaria italica
Seita.1G196000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27732202-27733201 Setaria italica
Seita.1G196000 2.0kb upstream 2.0kb upstream 2986 true scaffold_1: 27729216-27732201 Setaria italica
Seita.1G196000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27729216-27731215 Setaria italica
Seita.1G196000 2.0kb downstream 2.0kb downstream 2986 true scaffold_1: 27731216-27734201 Setaria italica
Seita.1G196000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27732202-27734201 Setaria italica
Seita.1G196000 5.0kb upstream 5.0kb upstream 5986 true scaffold_1: 27726216-27732201 Setaria italica
Seita.1G196000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27726216-27731215 Setaria italica
Seita.1G196000 5.0kb downstream 5.0kb downstream 5986 true scaffold_1: 27731216-27737201 Setaria italica
Seita.1G196000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27732202-27737201 Setaria italica
Seita.1G196000 10.0kb upstream 10.0kb upstream 10986 true scaffold_1: 27721216-27732201 Setaria italica
Seita.1G196000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27721216-27731215 Setaria italica
Seita.1G196000 10.0kb downstream 10.0kb downstream 10986 true scaffold_1: 27731216-27742201 Setaria italica
Seita.1G196000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27732202-27742201 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041430 5273 Angiosperm View MSA
122184995 5267 Panicoideae View MSA
124583974 5269 Grass View MSA
121347123 5274 Embryophyte View MSA
123425725 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.032        
cufflinks 1.023       Low
cufflinks 2.293        
cufflinks 6.166       High
cufflinks 2.977        
cufflinks 1.413        
cufflinks 1.06       Low
cufflinks 2.874        
cufflinks 1.394        
cufflinks 11.049       High
cufflinks 1.91        
cufflinks 3.474        
cufflinks 5.655       High
cufflinks 7.516       High
cufflinks 1.618        
cufflinks 1.175       Low
cufflinks 3.157        
cufflinks 3.096        
cufflinks 3.027        
cufflinks 3.118        

0 Strain