Gene : Seita.1G197900 S. italica v2.2
Defline:  (1 of 1) PTHR22942:SF24 - DNA REPAIR PROTEIN XRCC3 Genomic Order:  1979
Name:  ? Seita.1G197900 Secondary Identifier:  ? PAC:32695901
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G197900 0.5kb upstream 0.5kb upstream 4912 true scaffold_1: 27865903-27870814 Setaria italica
Seita.1G197900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27865903-27866402 Setaria italica
Seita.1G197900 0.5kb downstream 0.5kb downstream 4912 true scaffold_1: 27866403-27871314 Setaria italica
Seita.1G197900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27870815-27871314 Setaria italica
Seita.1G197900 1.0kb upstream 1.0kb upstream 5412 true scaffold_1: 27865403-27870814 Setaria italica
Seita.1G197900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27865403-27866402 Setaria italica
Seita.1G197900 1.0kb downstream 1.0kb downstream 5412 true scaffold_1: 27866403-27871814 Setaria italica
Seita.1G197900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27870815-27871814 Setaria italica
Seita.1G197900 2.0kb upstream 2.0kb upstream 6412 true scaffold_1: 27864403-27870814 Setaria italica
Seita.1G197900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27864403-27866402 Setaria italica
Seita.1G197900 2.0kb downstream 2.0kb downstream 6412 true scaffold_1: 27866403-27872814 Setaria italica
Seita.1G197900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27870815-27872814 Setaria italica
Seita.1G197900 5.0kb upstream 5.0kb upstream 9412 true scaffold_1: 27861403-27870814 Setaria italica
Seita.1G197900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27861403-27866402 Setaria italica
Seita.1G197900 5.0kb downstream 5.0kb downstream 9412 true scaffold_1: 27866403-27875814 Setaria italica
Seita.1G197900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27870815-27875814 Setaria italica
Seita.1G197900 10.0kb upstream 10.0kb upstream 14412 true scaffold_1: 27856403-27870814 Setaria italica
Seita.1G197900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27856403-27866402 Setaria italica
Seita.1G197900 10.0kb downstream 10.0kb downstream 14412 true scaffold_1: 27866403-27880814 Setaria italica
Seita.1G197900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27870815-27880814 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187662 5267 Panicoideae View MSA
124577643 5269 Grass View MSA
122048125 5273 Angiosperm View MSA
121349692 5274 Embryophyte View MSA
123425830 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.046     Low  
cufflinks 0.066     Low  
cufflinks 0.464       High
cufflinks 0.216       High
cufflinks 0.134        
cufflinks 0.045     Low  
cufflinks 0.033     Low Low
cufflinks 0.253       High
cufflinks 0.042     Low  
cufflinks 0.053     Low  
cufflinks 0.073     Low  
cufflinks 0.047     Low  
cufflinks 0.035     Low  
cufflinks 0.43       High
cufflinks 0.056     Low  
cufflinks 0.044     Low  
cufflinks 0.085     Low  
cufflinks 0.029     Low Low
cufflinks 0.102        
cufflinks 0.06     Low  

0 Strain