Gene : Seita.1G286500 S. italica v2.2
Defline:  (1 of 6) 1.10.3.11 - Ubiquinol oxidase (non-electrogenic) / Ubiquinol oxidase Genomic Order:  2865
Name:  ? Seita.1G286500 Secondary Identifier:  ? PAC:32695951
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4302 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G286500 0.5kb upstream 0.5kb upstream 3211 true scaffold_1: 35632875-35636085 Setaria italica
Seita.1G286500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 35635586-35636085 Setaria italica
Seita.1G286500 0.5kb downstream 0.5kb downstream 3211 true scaffold_1: 35632375-35635585 Setaria italica
Seita.1G286500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 35632375-35632874 Setaria italica
Seita.1G286500 1.0kb upstream 1.0kb upstream 3711 true scaffold_1: 35632875-35636585 Setaria italica
Seita.1G286500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 35635586-35636585 Setaria italica
Seita.1G286500 1.0kb downstream 1.0kb downstream 3711 true scaffold_1: 35631875-35635585 Setaria italica
Seita.1G286500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 35631875-35632874 Setaria italica
Seita.1G286500 2.0kb upstream 2.0kb upstream 4711 true scaffold_1: 35632875-35637585 Setaria italica
Seita.1G286500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 35635586-35637585 Setaria italica
Seita.1G286500 2.0kb downstream 2.0kb downstream 4711 true scaffold_1: 35630875-35635585 Setaria italica
Seita.1G286500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 35630875-35632874 Setaria italica
Seita.1G286500 5.0kb upstream 5.0kb upstream 7711 true scaffold_1: 35632875-35640585 Setaria italica
Seita.1G286500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 35635586-35640585 Setaria italica
Seita.1G286500 5.0kb downstream 5.0kb downstream 7711 true scaffold_1: 35627875-35635585 Setaria italica
Seita.1G286500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 35627875-35632874 Setaria italica
Seita.1G286500 10.0kb upstream 10.0kb upstream 12711 true scaffold_1: 35632875-35645585 Setaria italica
Seita.1G286500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 35635586-35645585 Setaria italica
Seita.1G286500 10.0kb downstream 10.0kb downstream 12711 true scaffold_1: 35622875-35635585 Setaria italica
Seita.1G286500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 35622875-35632874 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189355 5267 Panicoideae View MSA
124578836 5269 Grass View MSA
122048992 5273 Angiosperm View MSA
121347153 5274 Embryophyte View MSA
123426662 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.86       Low
cufflinks 3.014        
cufflinks 5.438        
cufflinks 4.999        
cufflinks 2.195        
cufflinks 3.298        
cufflinks 2.393        
cufflinks 2.764        
cufflinks 0.847       Low
cufflinks 5.992        
cufflinks 3.23        
cufflinks 7.354        
cufflinks 3.804        
cufflinks 9.363       High
cufflinks 6.697        
cufflinks 3.025        
cufflinks 8.307       High
cufflinks 1.021       Low
cufflinks 9.96       High
cufflinks 11.127       High

0 Strain