Gene : Seita.1G286600 S. italica v2.2
Defline:  (1 of 1) PTHR11785//PTHR11785:SF412 - AMINO ACID TRANSPORTER Genomic Order:  2866
Name:  ? Seita.1G286600 Secondary Identifier:  ? PAC:32695619
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G286600 0.5kb upstream 0.5kb upstream 3757 true scaffold_1: 35637273-35641029 Setaria italica
Seita.1G286600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 35640530-35641029 Setaria italica
Seita.1G286600 0.5kb downstream 0.5kb downstream 3757 true scaffold_1: 35636773-35640529 Setaria italica
Seita.1G286600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 35636773-35637272 Setaria italica
Seita.1G286600 1.0kb upstream 1.0kb upstream 4257 true scaffold_1: 35637273-35641529 Setaria italica
Seita.1G286600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 35640530-35641529 Setaria italica
Seita.1G286600 1.0kb downstream 1.0kb downstream 4257 true scaffold_1: 35636273-35640529 Setaria italica
Seita.1G286600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 35636273-35637272 Setaria italica
Seita.1G286600 2.0kb upstream 2.0kb upstream 5257 true scaffold_1: 35637273-35642529 Setaria italica
Seita.1G286600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 35640530-35642529 Setaria italica
Seita.1G286600 2.0kb downstream 2.0kb downstream 5257 true scaffold_1: 35635273-35640529 Setaria italica
Seita.1G286600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 35635273-35637272 Setaria italica
Seita.1G286600 5.0kb upstream 5.0kb upstream 8257 true scaffold_1: 35637273-35645529 Setaria italica
Seita.1G286600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 35640530-35645529 Setaria italica
Seita.1G286600 5.0kb downstream 5.0kb downstream 8257 true scaffold_1: 35632273-35640529 Setaria italica
Seita.1G286600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 35632273-35637272 Setaria italica
Seita.1G286600 10.0kb upstream 10.0kb upstream 13257 true scaffold_1: 35637273-35650529 Setaria italica
Seita.1G286600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 35640530-35650529 Setaria italica
Seita.1G286600 10.0kb downstream 10.0kb downstream 13257 true scaffold_1: 35627273-35640529 Setaria italica
Seita.1G286600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 35627273-35637272 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178795 5267 Panicoideae View MSA
124574950 5269 Grass View MSA
122043396 5273 Angiosperm View MSA
121345389 5274 Embryophyte View MSA
123424636 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.563        
cufflinks 0.225        
cufflinks 0.025     Low Low
cufflinks 0.029     Low Low
cufflinks 0.261        
cufflinks 0.268        
cufflinks 0.171        
cufflinks 0.193        
cufflinks 0.984       High
cufflinks 1.484       High
cufflinks 0.607        
cufflinks 0.311        
cufflinks 0.545        
cufflinks 0.314        
cufflinks 0.747        
cufflinks 0.038     Low Low
cufflinks 0.355        
cufflinks 0.056     Low Low
cufflinks 0.093        
cufflinks 0.95       High

0 Strain