Gene : Seita.1G286400 S. italica v2.2
Defline:  (1 of 2) PTHR31499:SF5 - HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN Genomic Order:  2864
Name:  ? Seita.1G286400 Secondary Identifier:  ? PAC:32694149
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G286400 0.5kb upstream 0.5kb upstream 3597 true scaffold_1: 35630032-35633628 Setaria italica
Seita.1G286400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 35630032-35630531 Setaria italica
Seita.1G286400 0.5kb downstream 0.5kb downstream 3597 true scaffold_1: 35630532-35634128 Setaria italica
Seita.1G286400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 35633629-35634128 Setaria italica
Seita.1G286400 1.0kb upstream 1.0kb upstream 4097 true scaffold_1: 35629532-35633628 Setaria italica
Seita.1G286400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 35629532-35630531 Setaria italica
Seita.1G286400 1.0kb downstream 1.0kb downstream 4097 true scaffold_1: 35630532-35634628 Setaria italica
Seita.1G286400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 35633629-35634628 Setaria italica
Seita.1G286400 2.0kb upstream 2.0kb upstream 5097 true scaffold_1: 35628532-35633628 Setaria italica
Seita.1G286400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 35628532-35630531 Setaria italica
Seita.1G286400 2.0kb downstream 2.0kb downstream 5097 true scaffold_1: 35630532-35635628 Setaria italica
Seita.1G286400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 35633629-35635628 Setaria italica
Seita.1G286400 5.0kb upstream 5.0kb upstream 8097 true scaffold_1: 35625532-35633628 Setaria italica
Seita.1G286400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 35625532-35630531 Setaria italica
Seita.1G286400 5.0kb downstream 5.0kb downstream 8097 true scaffold_1: 35630532-35638628 Setaria italica
Seita.1G286400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 35633629-35638628 Setaria italica
Seita.1G286400 10.0kb upstream 10.0kb upstream 13097 true scaffold_1: 35620532-35633628 Setaria italica
Seita.1G286400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 35620532-35630531 Setaria italica
Seita.1G286400 10.0kb downstream 10.0kb downstream 13097 true scaffold_1: 35630532-35643628 Setaria italica
Seita.1G286400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 35633629-35643628 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179778 5267 Panicoideae View MSA
124570211 5269 Grass View MSA
122042666 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121349639 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.481        
cufflinks 1.283        
cufflinks 1.213        
cufflinks 0.948        
cufflinks 0.767       Low
cufflinks 1.956        
cufflinks 1.581        
cufflinks 1.75        
cufflinks 1.064        
cufflinks 5.259       High
cufflinks 1.852        
cufflinks 6.109       High
cufflinks 2.974        
cufflinks 2.768        
cufflinks 4.393        
cufflinks 0.709       Low
cufflinks 5.996       High
cufflinks 0.354       Low
cufflinks 1.967        
cufflinks 10.342       High

0 Strain