Gene : Seita.1G287200 S. italica v2.2
Defline:  (1 of 1) PTHR10108:SF708 - TOCOPHEROL O-METHYLTRANSFERASE, CHLOROPLASTIC Genomic Order:  2872
Name:  ? Seita.1G287200 Secondary Identifier:  ? PAC:32696822
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-1422 Setaria italica pathologic  
Sitalica PWY-7436 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G287200 0.5kb upstream 0.5kb upstream 5031 true scaffold_1: 35694860-35699890 Setaria italica
Seita.1G287200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 35694860-35695359 Setaria italica
Seita.1G287200 0.5kb downstream 0.5kb downstream 5031 true scaffold_1: 35695360-35700390 Setaria italica
Seita.1G287200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 35699891-35700390 Setaria italica
Seita.1G287200 1.0kb upstream 1.0kb upstream 5531 true scaffold_1: 35694360-35699890 Setaria italica
Seita.1G287200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 35694360-35695359 Setaria italica
Seita.1G287200 1.0kb downstream 1.0kb downstream 5531 true scaffold_1: 35695360-35700890 Setaria italica
Seita.1G287200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 35699891-35700890 Setaria italica
Seita.1G287200 2.0kb upstream 2.0kb upstream 6531 true scaffold_1: 35693360-35699890 Setaria italica
Seita.1G287200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 35693360-35695359 Setaria italica
Seita.1G287200 2.0kb downstream 2.0kb downstream 6531 true scaffold_1: 35695360-35701890 Setaria italica
Seita.1G287200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 35699891-35701890 Setaria italica
Seita.1G287200 5.0kb upstream 5.0kb upstream 9531 true scaffold_1: 35690360-35699890 Setaria italica
Seita.1G287200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 35690360-35695359 Setaria italica
Seita.1G287200 5.0kb downstream 5.0kb downstream 9531 true scaffold_1: 35695360-35704890 Setaria italica
Seita.1G287200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 35699891-35704890 Setaria italica
Seita.1G287200 10.0kb upstream 10.0kb upstream 14531 true scaffold_1: 35685360-35699890 Setaria italica
Seita.1G287200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 35685360-35695359 Setaria italica
Seita.1G287200 10.0kb downstream 10.0kb downstream 14531 true scaffold_1: 35695360-35709890 Setaria italica
Seita.1G287200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 35699891-35709890 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182929 5267 Panicoideae View MSA
124569440 5269 Grass View MSA
122044817 5273 Angiosperm View MSA
121347406 5274 Embryophyte View MSA
123427925 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.863     High High
cufflinks 2.393       Low
cufflinks 7.3        
cufflinks 7.219        
cufflinks 7.768        
cufflinks 2.53       Low
cufflinks 7.932        
cufflinks 11.471        
cufflinks 6.324        
cufflinks 16.979     High High
cufflinks 10.716        
cufflinks 2.992       Low
cufflinks 5.91        
cufflinks 10.474        
cufflinks 3.815       Low
cufflinks 17.235     High High
cufflinks 7.067        
cufflinks 8.989        
cufflinks 8.083        
cufflinks 4.719        

0 Strain