Gene : Seita.1G291100 S. italica v2.2
Defline:  (1 of 1) PTHR11405:SF37 - CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN, CHLOROPLASTIC Genomic Order:  2911
Name:  ? Seita.1G291100 Secondary Identifier:  ? PAC:32695551
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ARGSYNBSUB-PWY Setaria italica pathologic  
Sitalica ARGSYN-PWY Setaria italica pathologic  
Sitalica CITRULBIO-PWY Setaria italica pathologic  
Sitalica GLUTAMINDEG-PWY Setaria italica pathologic  
Sitalica PWY0-162 Setaria italica pathologic  
Sitalica PWY-4984 Setaria italica pathologic  
Sitalica PWY-5686 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G291100 0.5kb upstream 0.5kb upstream 5139 true scaffold_1: 35997519-36002657 Setaria italica
Seita.1G291100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 35997519-35998018 Setaria italica
Seita.1G291100 0.5kb downstream 0.5kb downstream 5139 true scaffold_1: 35998019-36003157 Setaria italica
Seita.1G291100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36002658-36003157 Setaria italica
Seita.1G291100 1.0kb upstream 1.0kb upstream 5639 true scaffold_1: 35997019-36002657 Setaria italica
Seita.1G291100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 35997019-35998018 Setaria italica
Seita.1G291100 1.0kb downstream 1.0kb downstream 5639 true scaffold_1: 35998019-36003657 Setaria italica
Seita.1G291100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36002658-36003657 Setaria italica
Seita.1G291100 2.0kb upstream 2.0kb upstream 6639 true scaffold_1: 35996019-36002657 Setaria italica
Seita.1G291100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 35996019-35998018 Setaria italica
Seita.1G291100 2.0kb downstream 2.0kb downstream 6639 true scaffold_1: 35998019-36004657 Setaria italica
Seita.1G291100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36002658-36004657 Setaria italica
Seita.1G291100 5.0kb upstream 5.0kb upstream 9639 true scaffold_1: 35993019-36002657 Setaria italica
Seita.1G291100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 35993019-35998018 Setaria italica
Seita.1G291100 5.0kb downstream 5.0kb downstream 9639 true scaffold_1: 35998019-36007657 Setaria italica
Seita.1G291100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36002658-36007657 Setaria italica
Seita.1G291100 10.0kb upstream 10.0kb upstream 14639 true scaffold_1: 35988019-36002657 Setaria italica
Seita.1G291100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 35988019-35998018 Setaria italica
Seita.1G291100 10.0kb downstream 10.0kb downstream 14639 true scaffold_1: 35998019-36012657 Setaria italica
Seita.1G291100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36002658-36012657 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191073 5267 Panicoideae View MSA
124573496 5269 Grass View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.845     High  
cufflinks 23.454     High Low
cufflinks 82.624     High  
cufflinks 100.031     High  
cufflinks 99.802     High  
cufflinks 26.901     High Low
cufflinks 60.911     High  
cufflinks 59.241     High  
cufflinks 81.35     High  
cufflinks 47.644     High  
cufflinks 66.855     High  
cufflinks 139.233     High High
cufflinks 80.859     High  
cufflinks 84.244     High  
cufflinks 64.585     High  
cufflinks 60.357     High  
cufflinks 110.906     High  
cufflinks 151.111     High High
cufflinks 62.941     High  
cufflinks 74.091     High  

0 Strain