Gene : Seita.1G288900 S. italica v2.2
Defline:  (1 of 1) 2.1.3.3 - Ornithine carbamoyltransferase / OTCase Genomic Order:  2889
Name:  ? Seita.1G288900 Secondary Identifier:  ? PAC:32698025
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ARGSYNBSUB-PWY Setaria italica pathologic  
Sitalica ARGSYN-PWY Setaria italica pathologic  
Sitalica CITRULBIO-PWY Setaria italica pathologic  
Sitalica CITRULLINE-DEG-PWY Setaria italica pathologic  
Sitalica PWY-4984 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G288900 0.5kb upstream 0.5kb upstream 3862 true scaffold_1: 35817214-35821075 Setaria italica
Seita.1G288900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 35817214-35817713 Setaria italica
Seita.1G288900 0.5kb downstream 0.5kb downstream 3862 true scaffold_1: 35817714-35821575 Setaria italica
Seita.1G288900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 35821076-35821575 Setaria italica
Seita.1G288900 1.0kb upstream 1.0kb upstream 4362 true scaffold_1: 35816714-35821075 Setaria italica
Seita.1G288900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 35816714-35817713 Setaria italica
Seita.1G288900 1.0kb downstream 1.0kb downstream 4362 true scaffold_1: 35817714-35822075 Setaria italica
Seita.1G288900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 35821076-35822075 Setaria italica
Seita.1G288900 2.0kb upstream 2.0kb upstream 5362 true scaffold_1: 35815714-35821075 Setaria italica
Seita.1G288900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 35815714-35817713 Setaria italica
Seita.1G288900 2.0kb downstream 2.0kb downstream 5362 true scaffold_1: 35817714-35823075 Setaria italica
Seita.1G288900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 35821076-35823075 Setaria italica
Seita.1G288900 5.0kb upstream 5.0kb upstream 8362 true scaffold_1: 35812714-35821075 Setaria italica
Seita.1G288900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 35812714-35817713 Setaria italica
Seita.1G288900 5.0kb downstream 5.0kb downstream 8362 true scaffold_1: 35817714-35826075 Setaria italica
Seita.1G288900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 35821076-35826075 Setaria italica
Seita.1G288900 10.0kb upstream 10.0kb upstream 13362 true scaffold_1: 35807714-35821075 Setaria italica
Seita.1G288900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 35807714-35817713 Setaria italica
Seita.1G288900 10.0kb downstream 10.0kb downstream 13362 true scaffold_1: 35817714-35831075 Setaria italica
Seita.1G288900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 35821076-35831075 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175374 5267 Panicoideae View MSA
124573214 5269 Grass View MSA
122042632 5273 Angiosperm View MSA
121351468 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.18     High  
cufflinks 22.977     High  
cufflinks 14.385     High Low
cufflinks 14.147     High Low
cufflinks 19.7     High  
cufflinks 20.172     High  
cufflinks 25.18     High  
cufflinks 37.687     High High
cufflinks 40.254     High High
cufflinks 39.606     High High
cufflinks 28.926     High  
cufflinks 29.843     High  
cufflinks 29.877     High  
cufflinks 19.823     High  
cufflinks 21.099     High  
cufflinks 26.937     High  
cufflinks 32.104     High  
cufflinks 50.107     High High
cufflinks 14.501     High Low
cufflinks 25.447     High  

0 Strain