Gene : Seita.1G293300 S. italica v2.2
Defline:  (1 of 1) PTHR24031:SF50 - DEAD/DEAH BOX RNA HELICASE FAMILY PROTEIN Genomic Order:  2933
Name:  ? Seita.1G293300 Secondary Identifier:  ? PAC:32694103
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G293300 0.5kb upstream 0.5kb upstream 9864 true scaffold_1: 36141261-36151124 Setaria italica
Seita.1G293300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36141261-36141760 Setaria italica
Seita.1G293300 0.5kb downstream 0.5kb downstream 9864 true scaffold_1: 36141761-36151624 Setaria italica
Seita.1G293300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36151125-36151624 Setaria italica
Seita.1G293300 1.0kb upstream 1.0kb upstream 10364 true scaffold_1: 36140761-36151124 Setaria italica
Seita.1G293300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36140761-36141760 Setaria italica
Seita.1G293300 1.0kb downstream 1.0kb downstream 10364 true scaffold_1: 36141761-36152124 Setaria italica
Seita.1G293300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36151125-36152124 Setaria italica
Seita.1G293300 2.0kb upstream 2.0kb upstream 11364 true scaffold_1: 36139761-36151124 Setaria italica
Seita.1G293300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36139761-36141760 Setaria italica
Seita.1G293300 2.0kb downstream 2.0kb downstream 11364 true scaffold_1: 36141761-36153124 Setaria italica
Seita.1G293300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36151125-36153124 Setaria italica
Seita.1G293300 5.0kb upstream 5.0kb upstream 14364 true scaffold_1: 36136761-36151124 Setaria italica
Seita.1G293300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36136761-36141760 Setaria italica
Seita.1G293300 5.0kb downstream 5.0kb downstream 14364 true scaffold_1: 36141761-36156124 Setaria italica
Seita.1G293300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36151125-36156124 Setaria italica
Seita.1G293300 10.0kb upstream 10.0kb upstream 19364 true scaffold_1: 36131761-36151124 Setaria italica
Seita.1G293300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36131761-36141760 Setaria italica
Seita.1G293300 10.0kb downstream 10.0kb downstream 19364 true scaffold_1: 36141761-36161124 Setaria italica
Seita.1G293300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36151125-36161124 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041472 5273 Angiosperm View MSA
122187069 5267 Panicoideae View MSA
124582136 5269 Grass View MSA
121349019 5274 Embryophyte View MSA
123425837 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.69        
cufflinks 3.921        
cufflinks 4.615       High
cufflinks 3.185        
cufflinks 3.278        
cufflinks 4.189        
cufflinks 4.103        
cufflinks 3.298        
cufflinks 4.233        
cufflinks 1.633       Low
cufflinks 2.821        
cufflinks 1.902       Low
cufflinks 1.886       Low
cufflinks 5.064       High
cufflinks 2.295        
cufflinks 4.847       High
cufflinks 2.056       Low
cufflinks 4.875       High
cufflinks 2.457        
cufflinks 2.161       Low

0 Strain