Gene : Seita.1G295300 S. italica v2.2
Defline:  (1 of 1) PTHR15348//PTHR15348:SF4 - AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT Genomic Order:  2953
Name:  ? Seita.1G295300 Secondary Identifier:  ? PAC:32695071
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G295300 0.5kb upstream 0.5kb upstream 4749 true scaffold_1: 36287118-36291866 Setaria italica
Seita.1G295300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36291367-36291866 Setaria italica
Seita.1G295300 0.5kb downstream 0.5kb downstream 4749 true scaffold_1: 36286618-36291366 Setaria italica
Seita.1G295300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36286618-36287117 Setaria italica
Seita.1G295300 1.0kb upstream 1.0kb upstream 5249 true scaffold_1: 36287118-36292366 Setaria italica
Seita.1G295300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36291367-36292366 Setaria italica
Seita.1G295300 1.0kb downstream 1.0kb downstream 5249 true scaffold_1: 36286118-36291366 Setaria italica
Seita.1G295300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36286118-36287117 Setaria italica
Seita.1G295300 2.0kb upstream 2.0kb upstream 6249 true scaffold_1: 36287118-36293366 Setaria italica
Seita.1G295300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36291367-36293366 Setaria italica
Seita.1G295300 2.0kb downstream 2.0kb downstream 6249 true scaffold_1: 36285118-36291366 Setaria italica
Seita.1G295300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36285118-36287117 Setaria italica
Seita.1G295300 5.0kb upstream 5.0kb upstream 9249 true scaffold_1: 36287118-36296366 Setaria italica
Seita.1G295300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36291367-36296366 Setaria italica
Seita.1G295300 5.0kb downstream 5.0kb downstream 9249 true scaffold_1: 36282118-36291366 Setaria italica
Seita.1G295300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36282118-36287117 Setaria italica
Seita.1G295300 10.0kb upstream 10.0kb upstream 14249 true scaffold_1: 36287118-36301366 Setaria italica
Seita.1G295300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36291367-36301366 Setaria italica
Seita.1G295300 10.0kb downstream 10.0kb downstream 14249 true scaffold_1: 36277118-36291366 Setaria italica
Seita.1G295300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36277118-36287117 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192122 5267 Panicoideae View MSA
124573161 5269 Grass View MSA
122045434 5273 Angiosperm View MSA
121346901 5274 Embryophyte View MSA
123426327 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.635        
cufflinks 2.36        
cufflinks 3.229        
cufflinks 3.844       High
cufflinks 3.128        
cufflinks 2.819        
cufflinks 2.476        
cufflinks 2.917        
cufflinks 2.409        
cufflinks 2.879        
cufflinks 1.977        
cufflinks 2.093        
cufflinks 1.277       Low
cufflinks 3.549        
cufflinks 1.462       Low
cufflinks 4.047       High
cufflinks 1.79       Low
cufflinks 4.222       High
cufflinks 3.447        
cufflinks 1.568       Low

0 Strain