Gene : Seita.1G295600 S. italica v2.2
Defline:  (1 of 1) PTHR10210:SF34 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 4 Genomic Order:  2956
Name:  ? Seita.1G295600 Secondary Identifier:  ? PAC:32694637
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-662 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G295600 0.5kb upstream 0.5kb upstream 3558 true scaffold_1: 36303526-36307083 Setaria italica
Seita.1G295600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36303526-36304025 Setaria italica
Seita.1G295600 0.5kb downstream 0.5kb downstream 3558 true scaffold_1: 36304026-36307583 Setaria italica
Seita.1G295600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36307084-36307583 Setaria italica
Seita.1G295600 1.0kb upstream 1.0kb upstream 4058 true scaffold_1: 36303026-36307083 Setaria italica
Seita.1G295600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36303026-36304025 Setaria italica
Seita.1G295600 1.0kb downstream 1.0kb downstream 4058 true scaffold_1: 36304026-36308083 Setaria italica
Seita.1G295600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36307084-36308083 Setaria italica
Seita.1G295600 2.0kb upstream 2.0kb upstream 5058 true scaffold_1: 36302026-36307083 Setaria italica
Seita.1G295600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36302026-36304025 Setaria italica
Seita.1G295600 2.0kb downstream 2.0kb downstream 5058 true scaffold_1: 36304026-36309083 Setaria italica
Seita.1G295600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36307084-36309083 Setaria italica
Seita.1G295600 5.0kb upstream 5.0kb upstream 8058 true scaffold_1: 36299026-36307083 Setaria italica
Seita.1G295600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36299026-36304025 Setaria italica
Seita.1G295600 5.0kb downstream 5.0kb downstream 8058 true scaffold_1: 36304026-36312083 Setaria italica
Seita.1G295600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36307084-36312083 Setaria italica
Seita.1G295600 10.0kb upstream 10.0kb upstream 13058 true scaffold_1: 36294026-36307083 Setaria italica
Seita.1G295600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36294026-36304025 Setaria italica
Seita.1G295600 10.0kb downstream 10.0kb downstream 13058 true scaffold_1: 36304026-36317083 Setaria italica
Seita.1G295600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36307084-36317083 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196218 5267 Panicoideae View MSA
124573166 5269 Grass View MSA
122048410 5273 Angiosperm View MSA
121347977 5274 Embryophyte View MSA
123424356 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.253     High High
cufflinks 20.13     High  
cufflinks 10.085       Low
cufflinks 9.367       Low
cufflinks 11.206     High Low
cufflinks 22.072     High  
cufflinks 13.631     High  
cufflinks 20.854     High  
cufflinks 15.93     High  
cufflinks 32.628     High High
cufflinks 32.305     High High
cufflinks 28.939     High  
cufflinks 17.844     High  
cufflinks 14.277     High  
cufflinks 16.54     High  
cufflinks 15.016     High  
cufflinks 24.025     High  
cufflinks 29.028     High  
cufflinks 7.338       Low
cufflinks 31.822     High High

0 Strain