Gene : Seita.1G295800 S. italica v2.2
Defline:  (1 of 1) PTHR10366//PTHR10366:SF355 - NAD DEPENDENT EPIMERASE/DEHYDRATASE Genomic Order:  2958
Name:  ? Seita.1G295800 Secondary Identifier:  ? PAC:32695072
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G295800 0.5kb upstream 0.5kb upstream 5395 true scaffold_1: 36311102-36316496 Setaria italica
Seita.1G295800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36311102-36311601 Setaria italica
Seita.1G295800 0.5kb downstream 0.5kb downstream 5395 true scaffold_1: 36311602-36316996 Setaria italica
Seita.1G295800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36316497-36316996 Setaria italica
Seita.1G295800 1.0kb upstream 1.0kb upstream 5895 true scaffold_1: 36310602-36316496 Setaria italica
Seita.1G295800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36310602-36311601 Setaria italica
Seita.1G295800 1.0kb downstream 1.0kb downstream 5895 true scaffold_1: 36311602-36317496 Setaria italica
Seita.1G295800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36316497-36317496 Setaria italica
Seita.1G295800 2.0kb upstream 2.0kb upstream 6895 true scaffold_1: 36309602-36316496 Setaria italica
Seita.1G295800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36309602-36311601 Setaria italica
Seita.1G295800 2.0kb downstream 2.0kb downstream 6895 true scaffold_1: 36311602-36318496 Setaria italica
Seita.1G295800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36316497-36318496 Setaria italica
Seita.1G295800 5.0kb upstream 5.0kb upstream 9895 true scaffold_1: 36306602-36316496 Setaria italica
Seita.1G295800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36306602-36311601 Setaria italica
Seita.1G295800 5.0kb downstream 5.0kb downstream 9895 true scaffold_1: 36311602-36321496 Setaria italica
Seita.1G295800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36316497-36321496 Setaria italica
Seita.1G295800 10.0kb upstream 10.0kb upstream 14895 true scaffold_1: 36301602-36316496 Setaria italica
Seita.1G295800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36301602-36311601 Setaria italica
Seita.1G295800 10.0kb downstream 10.0kb downstream 14895 true scaffold_1: 36311602-36326496 Setaria italica
Seita.1G295800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36316497-36326496 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181254 5267 Panicoideae View MSA
124571759 5269 Grass View MSA
122044697 5273 Angiosperm View MSA
121343909 5274 Embryophyte View MSA
123427810 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.154        
cufflinks 5.173        
cufflinks 1.605       Low
cufflinks 1.286       Low
cufflinks 1.493       Low
cufflinks 5.118        
cufflinks 3.345        
cufflinks 3.689        
cufflinks 3.528        
cufflinks 5.055        
cufflinks 5.549        
cufflinks 4.693        
cufflinks 6.085        
cufflinks 3.315        
cufflinks 6.172        
cufflinks 1.732       Low
cufflinks 6.873       High
cufflinks 1.703       Low
cufflinks 2.525        
cufflinks 7.035       High

0 Strain