Gene : Seita.1G296900 S. italica v2.2
Defline:  (1 of 1) PTHR12601:SF6 - CLUSTERED MITOCHONDRIA PROTEIN HOMOLOG Genomic Order:  2969
Name:  ? Seita.1G296900 Secondary Identifier:  ? PAC:32697941
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G296900 0.5kb upstream 0.5kb upstream 12750 true scaffold_1: 36363664-36376413 Setaria italica
Seita.1G296900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36375914-36376413 Setaria italica
Seita.1G296900 0.5kb downstream 0.5kb downstream 12750 true scaffold_1: 36363164-36375913 Setaria italica
Seita.1G296900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36363164-36363663 Setaria italica
Seita.1G296900 1.0kb upstream 1.0kb upstream 13250 true scaffold_1: 36363664-36376913 Setaria italica
Seita.1G296900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36375914-36376913 Setaria italica
Seita.1G296900 1.0kb downstream 1.0kb downstream 13250 true scaffold_1: 36362664-36375913 Setaria italica
Seita.1G296900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36362664-36363663 Setaria italica
Seita.1G296900 2.0kb upstream 2.0kb upstream 14250 true scaffold_1: 36363664-36377913 Setaria italica
Seita.1G296900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36375914-36377913 Setaria italica
Seita.1G296900 2.0kb downstream 2.0kb downstream 14250 true scaffold_1: 36361664-36375913 Setaria italica
Seita.1G296900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36361664-36363663 Setaria italica
Seita.1G296900 5.0kb upstream 5.0kb upstream 17250 true scaffold_1: 36363664-36380913 Setaria italica
Seita.1G296900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36375914-36380913 Setaria italica
Seita.1G296900 5.0kb downstream 5.0kb downstream 17250 true scaffold_1: 36358664-36375913 Setaria italica
Seita.1G296900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36358664-36363663 Setaria italica
Seita.1G296900 10.0kb upstream 10.0kb upstream 22250 true scaffold_1: 36363664-36385913 Setaria italica
Seita.1G296900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36375914-36385913 Setaria italica
Seita.1G296900 10.0kb downstream 10.0kb downstream 22250 true scaffold_1: 36353664-36375913 Setaria italica
Seita.1G296900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36353664-36363663 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183526 5267 Panicoideae View MSA
124575079 5269 Grass View MSA
122046503 5273 Angiosperm View MSA
121349433 5274 Embryophyte View MSA
123381307 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.156     High High
cufflinks 27.232     High  
cufflinks 40.327     High High
cufflinks 28.794     High  
cufflinks 27.932     High  
cufflinks 31.975     High  
cufflinks 26.481     High  
cufflinks 24.028     High  
cufflinks 35.471     High  
cufflinks 14.383       Low
cufflinks 30.634     High  
cufflinks 25.243     High  
cufflinks 27.825     High  
cufflinks 37.86     High High
cufflinks 32.471     High  
cufflinks 33.043     High  
cufflinks 29.047     High  
cufflinks 38.723     High High
cufflinks 23.564     High  
cufflinks 25.16     High  

0 Strain