Gene : Seita.1G300600 S. italica v2.2
Defline:  (1 of 1) PTHR22950//PTHR22950:SF262 - AMINO ACID TRANSPORTER Genomic Order:  3006
Name:  ? Seita.1G300600 Secondary Identifier:  ? PAC:32698350
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G300600 0.5kb upstream 0.5kb upstream 6799 true scaffold_1: 36633838-36640636 Setaria italica
Seita.1G300600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36633838-36634337 Setaria italica
Seita.1G300600 0.5kb downstream 0.5kb downstream 6799 true scaffold_1: 36634338-36641136 Setaria italica
Seita.1G300600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36640637-36641136 Setaria italica
Seita.1G300600 1.0kb upstream 1.0kb upstream 7299 true scaffold_1: 36633338-36640636 Setaria italica
Seita.1G300600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36633338-36634337 Setaria italica
Seita.1G300600 1.0kb downstream 1.0kb downstream 7299 true scaffold_1: 36634338-36641636 Setaria italica
Seita.1G300600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36640637-36641636 Setaria italica
Seita.1G300600 2.0kb upstream 2.0kb upstream 8299 true scaffold_1: 36632338-36640636 Setaria italica
Seita.1G300600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36632338-36634337 Setaria italica
Seita.1G300600 2.0kb downstream 2.0kb downstream 8299 true scaffold_1: 36634338-36642636 Setaria italica
Seita.1G300600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36640637-36642636 Setaria italica
Seita.1G300600 5.0kb upstream 5.0kb upstream 11299 true scaffold_1: 36629338-36640636 Setaria italica
Seita.1G300600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36629338-36634337 Setaria italica
Seita.1G300600 5.0kb downstream 5.0kb downstream 11299 true scaffold_1: 36634338-36645636 Setaria italica
Seita.1G300600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36640637-36645636 Setaria italica
Seita.1G300600 10.0kb upstream 10.0kb upstream 16299 true scaffold_1: 36624338-36640636 Setaria italica
Seita.1G300600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36624338-36634337 Setaria italica
Seita.1G300600 10.0kb downstream 10.0kb downstream 16299 true scaffold_1: 36634338-36650636 Setaria italica
Seita.1G300600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36640637-36650636 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121996093 5273 Angiosperm View MSA
122190753 5267 Panicoideae View MSA
124590625 5269 Grass View MSA
121266266 5274 Embryophyte View MSA
123304609 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.904        
cufflinks 1.728        
cufflinks 0.543        
cufflinks 0.355       Low
cufflinks 0.275       Low
cufflinks 2.185        
cufflinks 0.975        
cufflinks 0.659        
cufflinks 0.346       Low
cufflinks 2.546        
cufflinks 2.904        
cufflinks 2.791        
cufflinks 5.285       High
cufflinks 1.505        
cufflinks 5.251       High
cufflinks 0.528        
cufflinks 3.522       High
cufflinks 0.459       Low
cufflinks 0.73        
cufflinks 5.233       High

0 Strain