Gene : Seita.1G300400 S. italica v2.2
Defline:  (1 of 1) PTHR10766//PTHR10766:SF53 - TRANSMEMBRANE 9 SUPERFAMILY PROTEIN Genomic Order:  3004
Name:  ? Seita.1G300400 Secondary Identifier:  ? PAC:32695583
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G300400 0.5kb upstream 0.5kb upstream 3726 true scaffold_1: 36621712-36625437 Setaria italica
Seita.1G300400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36621712-36622211 Setaria italica
Seita.1G300400 0.5kb downstream 0.5kb downstream 3726 true scaffold_1: 36622212-36625937 Setaria italica
Seita.1G300400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36625438-36625937 Setaria italica
Seita.1G300400 1.0kb upstream 1.0kb upstream 4226 true scaffold_1: 36621212-36625437 Setaria italica
Seita.1G300400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36621212-36622211 Setaria italica
Seita.1G300400 1.0kb downstream 1.0kb downstream 4226 true scaffold_1: 36622212-36626437 Setaria italica
Seita.1G300400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36625438-36626437 Setaria italica
Seita.1G300400 2.0kb upstream 2.0kb upstream 5226 true scaffold_1: 36620212-36625437 Setaria italica
Seita.1G300400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36620212-36622211 Setaria italica
Seita.1G300400 2.0kb downstream 2.0kb downstream 5226 true scaffold_1: 36622212-36627437 Setaria italica
Seita.1G300400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36625438-36627437 Setaria italica
Seita.1G300400 5.0kb upstream 5.0kb upstream 8226 true scaffold_1: 36617212-36625437 Setaria italica
Seita.1G300400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36617212-36622211 Setaria italica
Seita.1G300400 5.0kb downstream 5.0kb downstream 8226 true scaffold_1: 36622212-36630437 Setaria italica
Seita.1G300400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36625438-36630437 Setaria italica
Seita.1G300400 10.0kb upstream 10.0kb upstream 13226 true scaffold_1: 36612212-36625437 Setaria italica
Seita.1G300400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36612212-36622211 Setaria italica
Seita.1G300400 10.0kb downstream 10.0kb downstream 13226 true scaffold_1: 36622212-36635437 Setaria italica
Seita.1G300400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36625438-36635437 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194819 5267 Panicoideae View MSA
124576681 5269 Grass View MSA
122044185 5273 Angiosperm View MSA
121349188 5274 Embryophyte View MSA
123426870 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.209     High High
cufflinks 37.228     High High
cufflinks 11.175     High Low
cufflinks 9.662       Low
cufflinks 10.832     High Low
cufflinks 33.147     High High
cufflinks 28.683     High  
cufflinks 15.601     High  
cufflinks 21.562     High  
cufflinks 18.032     High  
cufflinks 31.175     High High
cufflinks 22.527     High  
cufflinks 19.55     High  
cufflinks 14.676     High  
cufflinks 28.616     High  
cufflinks 23.964     High  
cufflinks 23.185     High  
cufflinks 22.841     High  
cufflinks 15.15     High  
cufflinks 26.347     High  

0 Strain