Gene : Seita.1G301200 S. italica v2.2
Defline:  (1 of 1) PTHR21297:SF2 - DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4 Genomic Order:  3012
Name:  ? Seita.1G301200 Secondary Identifier:  ? PAC:32696613
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G301200 0.5kb upstream 0.5kb upstream 5116 true scaffold_1: 36692433-36697548 Setaria italica
Seita.1G301200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36697049-36697548 Setaria italica
Seita.1G301200 0.5kb downstream 0.5kb downstream 5116 true scaffold_1: 36691933-36697048 Setaria italica
Seita.1G301200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36691933-36692432 Setaria italica
Seita.1G301200 1.0kb upstream 1.0kb upstream 5616 true scaffold_1: 36692433-36698048 Setaria italica
Seita.1G301200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36697049-36698048 Setaria italica
Seita.1G301200 1.0kb downstream 1.0kb downstream 5616 true scaffold_1: 36691433-36697048 Setaria italica
Seita.1G301200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36691433-36692432 Setaria italica
Seita.1G301200 2.0kb upstream 2.0kb upstream 6616 true scaffold_1: 36692433-36699048 Setaria italica
Seita.1G301200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36697049-36699048 Setaria italica
Seita.1G301200 2.0kb downstream 2.0kb downstream 6616 true scaffold_1: 36690433-36697048 Setaria italica
Seita.1G301200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36690433-36692432 Setaria italica
Seita.1G301200 5.0kb upstream 5.0kb upstream 9616 true scaffold_1: 36692433-36702048 Setaria italica
Seita.1G301200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36697049-36702048 Setaria italica
Seita.1G301200 5.0kb downstream 5.0kb downstream 9616 true scaffold_1: 36687433-36697048 Setaria italica
Seita.1G301200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36687433-36692432 Setaria italica
Seita.1G301200 10.0kb upstream 10.0kb upstream 14616 true scaffold_1: 36692433-36707048 Setaria italica
Seita.1G301200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36697049-36707048 Setaria italica
Seita.1G301200 10.0kb downstream 10.0kb downstream 14616 true scaffold_1: 36682433-36697048 Setaria italica
Seita.1G301200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36682433-36692432 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187398 5267 Panicoideae View MSA
124577404 5269 Grass View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.939        
cufflinks 4.794       High
cufflinks 0.767       Low
cufflinks 0.709       Low
cufflinks 1.143        
cufflinks 5.343       High
cufflinks 2.265        
cufflinks 1.825        
cufflinks 1.884        
cufflinks 2.877        
cufflinks 2.424        
cufflinks 2.011        
cufflinks 2.615        
cufflinks 1.042       Low
cufflinks 3.048        
cufflinks 1.516        
cufflinks 3.161        
cufflinks 1.354        
cufflinks 0.603       Low
cufflinks 2.653        

0 Strain