Gene : Seita.1G305100 S. italica v2.2
Defline:  (1 of 2) PTHR23105//PTHR23105:SF61 - RIBOSOMAL PROTEIN L7AE FAMILY MEMBER Genomic Order:  3051
Name:  ? Seita.1G305100 Secondary Identifier:  ? PAC:32697552
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G305100 0.5kb upstream 0.5kb upstream 2482 true scaffold_1: 36931522-36934003 Setaria italica
Seita.1G305100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36933504-36934003 Setaria italica
Seita.1G305100 0.5kb downstream 0.5kb downstream 2482 true scaffold_1: 36931022-36933503 Setaria italica
Seita.1G305100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36931022-36931521 Setaria italica
Seita.1G305100 1.0kb upstream 1.0kb upstream 2982 true scaffold_1: 36931522-36934503 Setaria italica
Seita.1G305100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36933504-36934503 Setaria italica
Seita.1G305100 1.0kb downstream 1.0kb downstream 2982 true scaffold_1: 36930522-36933503 Setaria italica
Seita.1G305100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36930522-36931521 Setaria italica
Seita.1G305100 2.0kb upstream 2.0kb upstream 3982 true scaffold_1: 36931522-36935503 Setaria italica
Seita.1G305100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36933504-36935503 Setaria italica
Seita.1G305100 2.0kb downstream 2.0kb downstream 3982 true scaffold_1: 36929522-36933503 Setaria italica
Seita.1G305100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36929522-36931521 Setaria italica
Seita.1G305100 5.0kb upstream 5.0kb upstream 6982 true scaffold_1: 36931522-36938503 Setaria italica
Seita.1G305100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36933504-36938503 Setaria italica
Seita.1G305100 5.0kb downstream 5.0kb downstream 6982 true scaffold_1: 36926522-36933503 Setaria italica
Seita.1G305100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36926522-36931521 Setaria italica
Seita.1G305100 10.0kb upstream 10.0kb upstream 11982 true scaffold_1: 36931522-36943503 Setaria italica
Seita.1G305100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36933504-36943503 Setaria italica
Seita.1G305100 10.0kb downstream 10.0kb downstream 11982 true scaffold_1: 36921522-36933503 Setaria italica
Seita.1G305100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36921522-36931521 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040888 5273 Angiosperm View MSA
122176997 5267 Panicoideae View MSA
124585008 5269 Grass View MSA
121345742 5274 Embryophyte View MSA
123425979 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.102        
cufflinks 24.627     High  
cufflinks 4.099       Low
cufflinks 1.993       Low
cufflinks 3.535       Low
cufflinks 25.337     High  
cufflinks 9.846        
cufflinks 19.063     High  
cufflinks 16.213     High  
cufflinks 23.87     High  
cufflinks 12.296        
cufflinks 20.07     High  
cufflinks 13.964     High  
cufflinks 11.404        
cufflinks 18.699     High  
cufflinks 7.197        
cufflinks 30.138     High High
cufflinks 12.952     High  
cufflinks 3.893       Low
cufflinks 23.997     High  

0 Strain