Gene : Seita.1G306300 S. italica v2.2
Defline:  (1 of 5) 6.1.1.10 - Methionine--tRNA ligase / MetRS Genomic Order:  3063
Name:  ? Seita.1G306300 Secondary Identifier:  ? PAC:32694684
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G306300 0.5kb upstream 0.5kb upstream 6202 true scaffold_1: 36995241-37001442 Setaria italica
Seita.1G306300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 37000943-37001442 Setaria italica
Seita.1G306300 0.5kb downstream 0.5kb downstream 6202 true scaffold_1: 36994741-37000942 Setaria italica
Seita.1G306300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36994741-36995240 Setaria italica
Seita.1G306300 1.0kb upstream 1.0kb upstream 6702 true scaffold_1: 36995241-37001942 Setaria italica
Seita.1G306300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 37000943-37001942 Setaria italica
Seita.1G306300 1.0kb downstream 1.0kb downstream 6702 true scaffold_1: 36994241-37000942 Setaria italica
Seita.1G306300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36994241-36995240 Setaria italica
Seita.1G306300 2.0kb upstream 2.0kb upstream 7702 true scaffold_1: 36995241-37002942 Setaria italica
Seita.1G306300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 37000943-37002942 Setaria italica
Seita.1G306300 2.0kb downstream 2.0kb downstream 7702 true scaffold_1: 36993241-37000942 Setaria italica
Seita.1G306300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36993241-36995240 Setaria italica
Seita.1G306300 5.0kb upstream 5.0kb upstream 10702 true scaffold_1: 36995241-37005942 Setaria italica
Seita.1G306300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 37000943-37005942 Setaria italica
Seita.1G306300 5.0kb downstream 5.0kb downstream 10702 true scaffold_1: 36990241-37000942 Setaria italica
Seita.1G306300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36990241-36995240 Setaria italica
Seita.1G306300 10.0kb upstream 10.0kb upstream 15702 true scaffold_1: 36995241-37010942 Setaria italica
Seita.1G306300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 37000943-37010942 Setaria italica
Seita.1G306300 10.0kb downstream 10.0kb downstream 15702 true scaffold_1: 36985241-37000942 Setaria italica
Seita.1G306300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36985241-36995240 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029887 5273 Angiosperm View MSA
122187020 5267 Panicoideae View MSA
124465901 5269 Grass View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.993        
cufflinks 6.508        
cufflinks 28.554     High High
cufflinks 23.309     High High
cufflinks 13.807     High  
cufflinks 7.57        
cufflinks 7.286        
cufflinks 6.392        
cufflinks 6.942        
cufflinks 3.93       Low
cufflinks 5.603       Low
cufflinks 16.019     High  
cufflinks 12.146        
cufflinks 17.831     High High
cufflinks 15.236     High  
cufflinks 7.317        
cufflinks 10.259        
cufflinks 7.721        
cufflinks 18.014     High High
cufflinks 9.961        

0 Strain