Gene : Seita.1G304300 S. italica v2.2
Defline:  (1 of 2) PTHR13282:SF6 - PROTEIN FAM32A Genomic Order:  3043
Name:  ? Seita.1G304300 Secondary Identifier:  ? PAC:32694258
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G304300 0.5kb upstream 0.5kb upstream 2629 true scaffold_1: 36879066-36881694 Setaria italica
Seita.1G304300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 36881195-36881694 Setaria italica
Seita.1G304300 0.5kb downstream 0.5kb downstream 2629 true scaffold_1: 36878566-36881194 Setaria italica
Seita.1G304300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 36878566-36879065 Setaria italica
Seita.1G304300 1.0kb upstream 1.0kb upstream 3129 true scaffold_1: 36879066-36882194 Setaria italica
Seita.1G304300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 36881195-36882194 Setaria italica
Seita.1G304300 1.0kb downstream 1.0kb downstream 3129 true scaffold_1: 36878066-36881194 Setaria italica
Seita.1G304300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 36878066-36879065 Setaria italica
Seita.1G304300 2.0kb upstream 2.0kb upstream 4129 true scaffold_1: 36879066-36883194 Setaria italica
Seita.1G304300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 36881195-36883194 Setaria italica
Seita.1G304300 2.0kb downstream 2.0kb downstream 4129 true scaffold_1: 36877066-36881194 Setaria italica
Seita.1G304300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 36877066-36879065 Setaria italica
Seita.1G304300 5.0kb upstream 5.0kb upstream 7129 true scaffold_1: 36879066-36886194 Setaria italica
Seita.1G304300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 36881195-36886194 Setaria italica
Seita.1G304300 5.0kb downstream 5.0kb downstream 7129 true scaffold_1: 36874066-36881194 Setaria italica
Seita.1G304300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 36874066-36879065 Setaria italica
Seita.1G304300 10.0kb upstream 10.0kb upstream 12129 true scaffold_1: 36879066-36891194 Setaria italica
Seita.1G304300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 36881195-36891194 Setaria italica
Seita.1G304300 10.0kb downstream 10.0kb downstream 12129 true scaffold_1: 36869066-36881194 Setaria italica
Seita.1G304300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 36869066-36879065 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122063586 5267 Panicoideae View MSA
124363059 5269 Grass View MSA
122045426 5273 Angiosperm View MSA
121347666 5274 Embryophyte View MSA
123426193 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.245        
cufflinks 1.235        
cufflinks 0.088       Low
cufflinks 0.037     Low Low
cufflinks 0.175        
cufflinks 1.526       High
cufflinks 0.226        
cufflinks 0.956        
cufflinks 0.45        
cufflinks 0.366        
cufflinks 0.65        
cufflinks 1.035        
cufflinks 1.866       High
cufflinks 0.071     Low Low
cufflinks 1.393       High
cufflinks 0.141        
cufflinks 1.639       High
cufflinks 0.038     Low Low
cufflinks 0.067     Low Low
cufflinks 1.011        

0 Strain