Gene : Seita.1G312300 S. italica v2.2

Defline:  (1 of 7) PF01823 - MAC/Perforin domain (MACPF) Genomic Order:  3123
Name:  ? Seita.1G312300 Secondary Identifier:  ? PAC:32695995

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G312300 0.5kb upstream 0.5kb upstream 6429 true scaffold_1: 37375338-37381766 Setaria italica
Seita.1G312300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 37381267-37381766 Setaria italica
Seita.1G312300 0.5kb downstream 0.5kb downstream 6429 true scaffold_1: 37374838-37381266 Setaria italica
Seita.1G312300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 37374838-37375337 Setaria italica
Seita.1G312300 1.0kb upstream 1.0kb upstream 6929 true scaffold_1: 37375338-37382266 Setaria italica
Seita.1G312300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 37381267-37382266 Setaria italica
Seita.1G312300 1.0kb downstream 1.0kb downstream 6929 true scaffold_1: 37374338-37381266 Setaria italica
Seita.1G312300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 37374338-37375337 Setaria italica
Seita.1G312300 2.0kb upstream 2.0kb upstream 7929 true scaffold_1: 37375338-37383266 Setaria italica
Seita.1G312300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 37381267-37383266 Setaria italica
Seita.1G312300 2.0kb downstream 2.0kb downstream 7929 true scaffold_1: 37373338-37381266 Setaria italica
Seita.1G312300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 37373338-37375337 Setaria italica
Seita.1G312300 5.0kb upstream 5.0kb upstream 10929 true scaffold_1: 37375338-37386266 Setaria italica
Seita.1G312300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 37381267-37386266 Setaria italica
Seita.1G312300 5.0kb downstream 5.0kb downstream 10929 true scaffold_1: 37370338-37381266 Setaria italica
Seita.1G312300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 37370338-37375337 Setaria italica
Seita.1G312300 10.0kb upstream 10.0kb upstream 15929 true scaffold_1: 37375338-37391266 Setaria italica
Seita.1G312300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 37381267-37391266 Setaria italica
Seita.1G312300 10.0kb downstream 10.0kb downstream 15929 true scaffold_1: 37365338-37381266 Setaria italica
Seita.1G312300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 37365338-37375337 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181649 5267 Panicoideae View MSA
124572831 5269 Grass View MSA
122048328 5273 Angiosperm View MSA
121310931 5274 Embryophyte View MSA
123348303 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.077     Low  
cufflinks 0.056     Low  
cufflinks 0.02     Low Low
cufflinks 0.041     Low  
cufflinks 0.039     Low  
cufflinks 0.056     Low  
cufflinks 0.022     Low Low
cufflinks 0.034     Low  
cufflinks 0.041     Low  
cufflinks 0.262     Low High
cufflinks 0.135     Low  
cufflinks 0.273       High
cufflinks 0.46       High
cufflinks 0.028     Low Low
cufflinks 0.42       High
cufflinks 0.041     Low  
cufflinks 0.25       High
cufflinks 0.106        
cufflinks 0.059     Low  
cufflinks 0.47       High

0 Strain