Gene : Seita.1G317000 S. italica v2.2
Defline:  (1 of 4) PTHR12281 - RP42 RELATED Genomic Order:  3170
Name:  ? Seita.1G317000 Secondary Identifier:  ? PAC:32694554
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G317000 0.5kb upstream 0.5kb upstream 5322 true scaffold_1: 37761958-37767279 Setaria italica
Seita.1G317000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 37761958-37762457 Setaria italica
Seita.1G317000 0.5kb downstream 0.5kb downstream 5322 true scaffold_1: 37762458-37767779 Setaria italica
Seita.1G317000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 37767280-37767779 Setaria italica
Seita.1G317000 1.0kb upstream 1.0kb upstream 5822 true scaffold_1: 37761458-37767279 Setaria italica
Seita.1G317000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 37761458-37762457 Setaria italica
Seita.1G317000 1.0kb downstream 1.0kb downstream 5822 true scaffold_1: 37762458-37768279 Setaria italica
Seita.1G317000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 37767280-37768279 Setaria italica
Seita.1G317000 2.0kb upstream 2.0kb upstream 6822 true scaffold_1: 37760458-37767279 Setaria italica
Seita.1G317000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 37760458-37762457 Setaria italica
Seita.1G317000 2.0kb downstream 2.0kb downstream 6822 true scaffold_1: 37762458-37769279 Setaria italica
Seita.1G317000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 37767280-37769279 Setaria italica
Seita.1G317000 5.0kb upstream 5.0kb upstream 9822 true scaffold_1: 37757458-37767279 Setaria italica
Seita.1G317000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 37757458-37762457 Setaria italica
Seita.1G317000 5.0kb downstream 5.0kb downstream 9822 true scaffold_1: 37762458-37772279 Setaria italica
Seita.1G317000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 37767280-37772279 Setaria italica
Seita.1G317000 10.0kb upstream 10.0kb upstream 14822 true scaffold_1: 37752458-37767279 Setaria italica
Seita.1G317000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 37752458-37762457 Setaria italica
Seita.1G317000 10.0kb downstream 10.0kb downstream 14822 true scaffold_1: 37762458-37777279 Setaria italica
Seita.1G317000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 37767280-37777279 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026541 5273 Angiosperm View MSA
122188245 5267 Panicoideae View MSA
124585569 5269 Grass View MSA
121343884 5274 Embryophyte View MSA
123426015 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.154        
cufflinks 2.467        
cufflinks 0.958       Low
cufflinks 0.943       Low
cufflinks 0.703       Low
cufflinks 2.343        
cufflinks 1.927        
cufflinks 1.871        
cufflinks 0.76       Low
cufflinks 3.518       High
cufflinks 2.627        
cufflinks 4.153       High
cufflinks 2.251        
cufflinks 0.678       Low
cufflinks 2.993        
cufflinks 2.235        
cufflinks 3.602       High
cufflinks 2.632        
cufflinks 1.411        
cufflinks 3.122        

0 Strain