Gene : Seita.1G242700 S. italica v2.2
Defline:  (1 of 6) PF05757 - Oxygen evolving enhancer protein 3 (PsbQ) (PsbQ) Genomic Order:  2427
Name:  ? Seita.1G242700 Secondary Identifier:  ? PAC:32698090
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G242700 0.5kb upstream 0.5kb upstream 6852 true scaffold_1: 31993159-32000010 Setaria italica
Seita.1G242700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 31993159-31993658 Setaria italica
Seita.1G242700 0.5kb downstream 0.5kb downstream 6852 true scaffold_1: 31993659-32000510 Setaria italica
Seita.1G242700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 32000011-32000510 Setaria italica
Seita.1G242700 1.0kb upstream 1.0kb upstream 7352 true scaffold_1: 31992659-32000010 Setaria italica
Seita.1G242700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 31992659-31993658 Setaria italica
Seita.1G242700 1.0kb downstream 1.0kb downstream 7352 true scaffold_1: 31993659-32001010 Setaria italica
Seita.1G242700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 32000011-32001010 Setaria italica
Seita.1G242700 2.0kb upstream 2.0kb upstream 8352 true scaffold_1: 31991659-32000010 Setaria italica
Seita.1G242700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 31991659-31993658 Setaria italica
Seita.1G242700 2.0kb downstream 2.0kb downstream 8352 true scaffold_1: 31993659-32002010 Setaria italica
Seita.1G242700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 32000011-32002010 Setaria italica
Seita.1G242700 5.0kb upstream 5.0kb upstream 11352 true scaffold_1: 31988659-32000010 Setaria italica
Seita.1G242700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 31988659-31993658 Setaria italica
Seita.1G242700 5.0kb downstream 5.0kb downstream 11352 true scaffold_1: 31993659-32005010 Setaria italica
Seita.1G242700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 32000011-32005010 Setaria italica
Seita.1G242700 10.0kb upstream 10.0kb upstream 16352 true scaffold_1: 31983659-32000010 Setaria italica
Seita.1G242700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 31983659-31993658 Setaria italica
Seita.1G242700 10.0kb downstream 10.0kb downstream 16352 true scaffold_1: 31993659-32010010 Setaria italica
Seita.1G242700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 32000011-32010010 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191196 5267 Panicoideae View MSA
124588669 5269 Grass View MSA
122049386 5273 Angiosperm View MSA
121311379 5274 Embryophyte View MSA
123348684 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.09     Low  
cufflinks 0.219       High
cufflinks 0.023     Low Low
cufflinks 0.044     Low Low
cufflinks 0.05     Low  
cufflinks 0.198       High
cufflinks 0.071     Low  
cufflinks 0.063     Low  
cufflinks 0.045     Low Low
cufflinks 0.199     Low High
cufflinks 0.09     Low  
cufflinks 0.102     Low  
cufflinks 0.308       High
cufflinks 0.045     Low Low
cufflinks 0.206       High
cufflinks 0.047     Low  
cufflinks 0.206       High
cufflinks 0.092     Low  
cufflinks 0.127        
cufflinks 0.125     Low  

0 Strain