Gene : Seita.1G246400 S. italica v2.2
Defline:  (1 of 1) PTHR24031:SF303 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL Genomic Order:  2464
Name:  ? Seita.1G246400 Secondary Identifier:  ? PAC:32696643
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G246400 0.5kb upstream 0.5kb upstream 4003 true scaffold_1: 32312411-32316413 Setaria italica
Seita.1G246400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 32315914-32316413 Setaria italica
Seita.1G246400 0.5kb downstream 0.5kb downstream 4003 true scaffold_1: 32311911-32315913 Setaria italica
Seita.1G246400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 32311911-32312410 Setaria italica
Seita.1G246400 1.0kb upstream 1.0kb upstream 4503 true scaffold_1: 32312411-32316913 Setaria italica
Seita.1G246400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 32315914-32316913 Setaria italica
Seita.1G246400 1.0kb downstream 1.0kb downstream 4503 true scaffold_1: 32311411-32315913 Setaria italica
Seita.1G246400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 32311411-32312410 Setaria italica
Seita.1G246400 2.0kb upstream 2.0kb upstream 5503 true scaffold_1: 32312411-32317913 Setaria italica
Seita.1G246400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 32315914-32317913 Setaria italica
Seita.1G246400 2.0kb downstream 2.0kb downstream 5503 true scaffold_1: 32310411-32315913 Setaria italica
Seita.1G246400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 32310411-32312410 Setaria italica
Seita.1G246400 5.0kb upstream 5.0kb upstream 8503 true scaffold_1: 32312411-32320913 Setaria italica
Seita.1G246400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 32315914-32320913 Setaria italica
Seita.1G246400 5.0kb downstream 5.0kb downstream 8503 true scaffold_1: 32307411-32315913 Setaria italica
Seita.1G246400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 32307411-32312410 Setaria italica
Seita.1G246400 10.0kb upstream 10.0kb upstream 13503 true scaffold_1: 32312411-32325913 Setaria italica
Seita.1G246400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 32315914-32325913 Setaria italica
Seita.1G246400 10.0kb downstream 10.0kb downstream 13503 true scaffold_1: 32302411-32315913 Setaria italica
Seita.1G246400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 32302411-32312410 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185677 5267 Panicoideae View MSA
124577552 5269 Grass View MSA
122045759 5273 Angiosperm View MSA
121346907 5274 Embryophyte View MSA
123426302 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.165     High  
cufflinks 13.624     High  
cufflinks 12.991     High  
cufflinks 5.428        
cufflinks 14.788     High  
cufflinks 14.101     High  
cufflinks 23.059     High High
cufflinks 16.418     High  
cufflinks 39.279     High High
cufflinks 6.999        
cufflinks 13.027        
cufflinks 2.628       Low
cufflinks 3.075       Low
cufflinks 16.936     High  
cufflinks 3.733       Low
cufflinks 22.052     High High
cufflinks 3.599       Low
cufflinks 16.547     High  
cufflinks 5.617        
cufflinks 3.921       Low

0 Strain