Gene : Seita.1G251100 S. italica v2.2
Defline:  (1 of 2) PTHR10106//PTHR10106:SF17 - CYTOCHROME B561-RELATED Genomic Order:  2511
Name:  ? Seita.1G251100 Secondary Identifier:  ? PAC:32697512
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G251100 0.5kb upstream 0.5kb upstream 2992 true scaffold_1: 32663170-32666161 Setaria italica
Seita.1G251100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 32665662-32666161 Setaria italica
Seita.1G251100 0.5kb downstream 0.5kb downstream 2992 true scaffold_1: 32662670-32665661 Setaria italica
Seita.1G251100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 32662670-32663169 Setaria italica
Seita.1G251100 1.0kb upstream 1.0kb upstream 3492 true scaffold_1: 32663170-32666661 Setaria italica
Seita.1G251100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 32665662-32666661 Setaria italica
Seita.1G251100 1.0kb downstream 1.0kb downstream 3492 true scaffold_1: 32662170-32665661 Setaria italica
Seita.1G251100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 32662170-32663169 Setaria italica
Seita.1G251100 2.0kb upstream 2.0kb upstream 4492 true scaffold_1: 32663170-32667661 Setaria italica
Seita.1G251100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 32665662-32667661 Setaria italica
Seita.1G251100 2.0kb downstream 2.0kb downstream 4492 true scaffold_1: 32661170-32665661 Setaria italica
Seita.1G251100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 32661170-32663169 Setaria italica
Seita.1G251100 5.0kb upstream 5.0kb upstream 7492 true scaffold_1: 32663170-32670661 Setaria italica
Seita.1G251100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 32665662-32670661 Setaria italica
Seita.1G251100 5.0kb downstream 5.0kb downstream 7492 true scaffold_1: 32658170-32665661 Setaria italica
Seita.1G251100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 32658170-32663169 Setaria italica
Seita.1G251100 10.0kb upstream 10.0kb upstream 12492 true scaffold_1: 32663170-32675661 Setaria italica
Seita.1G251100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 32665662-32675661 Setaria italica
Seita.1G251100 10.0kb downstream 10.0kb downstream 12492 true scaffold_1: 32653170-32665661 Setaria italica
Seita.1G251100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 32653170-32663169 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184833 5267 Panicoideae View MSA
124568815 5269 Grass View MSA
122048765 5273 Angiosperm View MSA
123429174 5275 Viridiplantae View MSA
121350477 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.58        
cufflinks 6.155       Low
cufflinks 25.127     High  
cufflinks 22.387     High  
cufflinks 22.469     High  
cufflinks 5.014       Low
cufflinks 16.708     High  
cufflinks 20.72     High  
cufflinks 8.972        
cufflinks 18.995     High  
cufflinks 12.099        
cufflinks 10.136        
cufflinks 20.245     High  
cufflinks 26.994     High High
cufflinks 17.901     High  
cufflinks 20.991     High  
cufflinks 18.096     High  
cufflinks 8.001       Low
cufflinks 39.705     High High
cufflinks 10.968        

0 Strain