Gene : Seita.1G253900 S. italica v2.2
Defline:  (1 of 1) PTHR23076:SF70 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 7, CHLOROPLASTIC-RELATED Genomic Order:  2539
Name:  ? Seita.1G253900 Secondary Identifier:  ? PAC:32698430
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G253900 0.5kb upstream 0.5kb upstream 5745 true scaffold_1: 32933591-32939335 Setaria italica
Seita.1G253900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 32933591-32934090 Setaria italica
Seita.1G253900 0.5kb downstream 0.5kb downstream 5745 true scaffold_1: 32934091-32939835 Setaria italica
Seita.1G253900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 32939336-32939835 Setaria italica
Seita.1G253900 1.0kb upstream 1.0kb upstream 6245 true scaffold_1: 32933091-32939335 Setaria italica
Seita.1G253900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 32933091-32934090 Setaria italica
Seita.1G253900 1.0kb downstream 1.0kb downstream 6245 true scaffold_1: 32934091-32940335 Setaria italica
Seita.1G253900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 32939336-32940335 Setaria italica
Seita.1G253900 2.0kb upstream 2.0kb upstream 7245 true scaffold_1: 32932091-32939335 Setaria italica
Seita.1G253900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 32932091-32934090 Setaria italica
Seita.1G253900 2.0kb downstream 2.0kb downstream 7245 true scaffold_1: 32934091-32941335 Setaria italica
Seita.1G253900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 32939336-32941335 Setaria italica
Seita.1G253900 5.0kb upstream 5.0kb upstream 10245 true scaffold_1: 32929091-32939335 Setaria italica
Seita.1G253900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 32929091-32934090 Setaria italica
Seita.1G253900 5.0kb downstream 5.0kb downstream 10245 true scaffold_1: 32934091-32944335 Setaria italica
Seita.1G253900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 32939336-32944335 Setaria italica
Seita.1G253900 10.0kb upstream 10.0kb upstream 15245 true scaffold_1: 32924091-32939335 Setaria italica
Seita.1G253900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 32924091-32934090 Setaria italica
Seita.1G253900 10.0kb downstream 10.0kb downstream 15245 true scaffold_1: 32934091-32949335 Setaria italica
Seita.1G253900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 32939336-32949335 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181439 5267 Panicoideae View MSA
124575251 5269 Grass View MSA
122042272 5273 Angiosperm View MSA
121349711 5274 Embryophyte View MSA
123424503 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.835     High  
cufflinks 20.18     High  
cufflinks 89.589     High High
cufflinks 87.832     High High
cufflinks 73.593     High High
cufflinks 21.41     High  
cufflinks 40.118     High  
cufflinks 40.633     High  
cufflinks 41.402     High  
cufflinks 13.101       Low
cufflinks 16.455     High  
cufflinks 17.445     High  
cufflinks 15.696     High Low
cufflinks 55.059     High  
cufflinks 17.699     High  
cufflinks 63.904     High High
cufflinks 15.759     High Low
cufflinks 36.867     High  
cufflinks 75.892     High High
cufflinks 15.543     High Low

0 Strain