Gene : Seita.1G254900 S. italica v2.2
Defline:  (1 of 2) KOG3102 - Uncharacterized conserved protein Genomic Order:  2549
Name:  ? Seita.1G254900 Secondary Identifier:  ? PAC:32693841
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G254900 0.5kb upstream 0.5kb upstream 2372 true scaffold_1: 33018285-33020656 Setaria italica
Seita.1G254900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33020157-33020656 Setaria italica
Seita.1G254900 0.5kb downstream 0.5kb downstream 2372 true scaffold_1: 33017785-33020156 Setaria italica
Seita.1G254900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33017785-33018284 Setaria italica
Seita.1G254900 1.0kb upstream 1.0kb upstream 2872 true scaffold_1: 33018285-33021156 Setaria italica
Seita.1G254900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33020157-33021156 Setaria italica
Seita.1G254900 1.0kb downstream 1.0kb downstream 2872 true scaffold_1: 33017285-33020156 Setaria italica
Seita.1G254900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33017285-33018284 Setaria italica
Seita.1G254900 2.0kb upstream 2.0kb upstream 3872 true scaffold_1: 33018285-33022156 Setaria italica
Seita.1G254900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33020157-33022156 Setaria italica
Seita.1G254900 2.0kb downstream 2.0kb downstream 3872 true scaffold_1: 33016285-33020156 Setaria italica
Seita.1G254900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33016285-33018284 Setaria italica
Seita.1G254900 5.0kb upstream 5.0kb upstream 6872 true scaffold_1: 33018285-33025156 Setaria italica
Seita.1G254900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33020157-33025156 Setaria italica
Seita.1G254900 5.0kb downstream 5.0kb downstream 6872 true scaffold_1: 33013285-33020156 Setaria italica
Seita.1G254900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33013285-33018284 Setaria italica
Seita.1G254900 10.0kb upstream 10.0kb upstream 11872 true scaffold_1: 33018285-33030156 Setaria italica
Seita.1G254900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33020157-33030156 Setaria italica
Seita.1G254900 10.0kb downstream 10.0kb downstream 11872 true scaffold_1: 33008285-33020156 Setaria italica
Seita.1G254900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33008285-33018284 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122032234 5273 Angiosperm View MSA
122065992 5267 Panicoideae View MSA
124365196 5269 Grass View MSA
123429042 5275 Viridiplantae View MSA
121301157 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.546        
cufflinks 0.794        
cufflinks 0.552        
cufflinks 0.305       Low
cufflinks 0.455        
cufflinks 0.845        
cufflinks 0.58        
cufflinks 0.814        
cufflinks 0.359        
cufflinks 2.049       High
cufflinks 0.531        
cufflinks 0.643        
cufflinks 0.393        
cufflinks 0.61        
cufflinks 0.615        
cufflinks 0.32       Low
cufflinks 0.673        
cufflinks 0.228       Low
cufflinks 0.365        
cufflinks 0.599        

0 Strain