Gene : Seita.1G256900 S. italica v2.2
Defline:  (1 of 2) PTHR11941//PTHR11941:SF79 - ENOYL-COA HYDRATASE-RELATED Genomic Order:  2569
Name:  ? Seita.1G256900 Secondary Identifier:  ? PAC:32696875
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LEU-DEG2-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G256900 0.5kb upstream 0.5kb upstream 4197 true scaffold_1: 33183649-33187845 Setaria italica
Seita.1G256900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33183649-33184148 Setaria italica
Seita.1G256900 0.5kb downstream 0.5kb downstream 4197 true scaffold_1: 33184149-33188345 Setaria italica
Seita.1G256900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33187846-33188345 Setaria italica
Seita.1G256900 1.0kb upstream 1.0kb upstream 4697 true scaffold_1: 33183149-33187845 Setaria italica
Seita.1G256900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33183149-33184148 Setaria italica
Seita.1G256900 1.0kb downstream 1.0kb downstream 4697 true scaffold_1: 33184149-33188845 Setaria italica
Seita.1G256900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33187846-33188845 Setaria italica
Seita.1G256900 2.0kb upstream 2.0kb upstream 5697 true scaffold_1: 33182149-33187845 Setaria italica
Seita.1G256900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33182149-33184148 Setaria italica
Seita.1G256900 2.0kb downstream 2.0kb downstream 5697 true scaffold_1: 33184149-33189845 Setaria italica
Seita.1G256900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33187846-33189845 Setaria italica
Seita.1G256900 5.0kb upstream 5.0kb upstream 8697 true scaffold_1: 33179149-33187845 Setaria italica
Seita.1G256900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33179149-33184148 Setaria italica
Seita.1G256900 5.0kb downstream 5.0kb downstream 8697 true scaffold_1: 33184149-33192845 Setaria italica
Seita.1G256900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33187846-33192845 Setaria italica
Seita.1G256900 10.0kb upstream 10.0kb upstream 13697 true scaffold_1: 33174149-33187845 Setaria italica
Seita.1G256900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33174149-33184148 Setaria italica
Seita.1G256900 10.0kb downstream 10.0kb downstream 13697 true scaffold_1: 33184149-33197845 Setaria italica
Seita.1G256900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33187846-33197845 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994710 5273 Angiosperm View MSA
122195926 5267 Panicoideae View MSA
124585375 5269 Grass View MSA
121264927 5274 Embryophyte View MSA
123427880 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.419       High
cufflinks 7.83       High
cufflinks 1.752       Low
cufflinks 1.279       Low
cufflinks 1.399       Low
cufflinks 5.243        
cufflinks 3.35        
cufflinks 4.126        
cufflinks 3.184        
cufflinks 7.595       High
cufflinks 5.474        
cufflinks 3.2        
cufflinks 3.98        
cufflinks 5.135        
cufflinks 5.086        
cufflinks 2.444        
cufflinks 2.969        
cufflinks 3.002        
cufflinks 2.612        
cufflinks 3.917        

0 Strain