Gene : Seita.1G257500 S. italica v2.2
Defline:  (1 of 1) PTHR31296:SF1 - UPF0565 PROTEIN C2ORF69 Genomic Order:  2575
Name:  ? Seita.1G257500 Secondary Identifier:  ? PAC:32697547
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G257500 0.5kb upstream 0.5kb upstream 2987 true scaffold_1: 33219414-33222400 Setaria italica
Seita.1G257500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33219414-33219913 Setaria italica
Seita.1G257500 0.5kb downstream 0.5kb downstream 2987 true scaffold_1: 33219914-33222900 Setaria italica
Seita.1G257500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33222401-33222900 Setaria italica
Seita.1G257500 1.0kb upstream 1.0kb upstream 3487 true scaffold_1: 33218914-33222400 Setaria italica
Seita.1G257500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33218914-33219913 Setaria italica
Seita.1G257500 1.0kb downstream 1.0kb downstream 3487 true scaffold_1: 33219914-33223400 Setaria italica
Seita.1G257500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33222401-33223400 Setaria italica
Seita.1G257500 2.0kb upstream 2.0kb upstream 4487 true scaffold_1: 33217914-33222400 Setaria italica
Seita.1G257500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33217914-33219913 Setaria italica
Seita.1G257500 2.0kb downstream 2.0kb downstream 4487 true scaffold_1: 33219914-33224400 Setaria italica
Seita.1G257500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33222401-33224400 Setaria italica
Seita.1G257500 5.0kb upstream 5.0kb upstream 7487 true scaffold_1: 33214914-33222400 Setaria italica
Seita.1G257500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33214914-33219913 Setaria italica
Seita.1G257500 5.0kb downstream 5.0kb downstream 7487 true scaffold_1: 33219914-33227400 Setaria italica
Seita.1G257500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33222401-33227400 Setaria italica
Seita.1G257500 10.0kb upstream 10.0kb upstream 12487 true scaffold_1: 33209914-33222400 Setaria italica
Seita.1G257500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33209914-33219913 Setaria italica
Seita.1G257500 10.0kb downstream 10.0kb downstream 12487 true scaffold_1: 33219914-33232400 Setaria italica
Seita.1G257500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33222401-33232400 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196035 5267 Panicoideae View MSA
124571542 5269 Grass View MSA
122048933 5273 Angiosperm View MSA
121346083 5274 Embryophyte View MSA
123425579 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.706        
cufflinks 0.677        
cufflinks 0.407        
cufflinks 0.297       Low
cufflinks 0.283       Low
cufflinks 0.565        
cufflinks 0.63        
cufflinks 0.352        
cufflinks 0.279       Low
cufflinks 0.64        
cufflinks 0.488        
cufflinks 0.408        
cufflinks 0.487        
cufflinks 0.579        
cufflinks 0.634        
cufflinks 0.985       High
cufflinks 0.316       Low
cufflinks 1.203       High
cufflinks 0.708        
cufflinks 0.312       Low

0 Strain