Gene : Seita.1G257700 S. italica v2.2
Defline:  (1 of 2) 4.2.1.33 - 3-isopropylmalate dehydratase / Isopropylmalate isomerase Genomic Order:  2577
Name:  ? Seita.1G257700 Secondary Identifier:  ? PAC:32695506
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica BRANCHED-CHAIN-AA-SYN-PWY Setaria italica pathologic  
Sitalica LEUSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G257700 0.5kb upstream 0.5kb upstream 3514 true scaffold_1: 33236761-33240274 Setaria italica
Seita.1G257700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33239775-33240274 Setaria italica
Seita.1G257700 0.5kb downstream 0.5kb downstream 3514 true scaffold_1: 33236261-33239774 Setaria italica
Seita.1G257700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33236261-33236760 Setaria italica
Seita.1G257700 1.0kb upstream 1.0kb upstream 4014 true scaffold_1: 33236761-33240774 Setaria italica
Seita.1G257700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33239775-33240774 Setaria italica
Seita.1G257700 1.0kb downstream 1.0kb downstream 4014 true scaffold_1: 33235761-33239774 Setaria italica
Seita.1G257700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33235761-33236760 Setaria italica
Seita.1G257700 2.0kb upstream 2.0kb upstream 5014 true scaffold_1: 33236761-33241774 Setaria italica
Seita.1G257700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33239775-33241774 Setaria italica
Seita.1G257700 2.0kb downstream 2.0kb downstream 5014 true scaffold_1: 33234761-33239774 Setaria italica
Seita.1G257700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33234761-33236760 Setaria italica
Seita.1G257700 5.0kb upstream 5.0kb upstream 8014 true scaffold_1: 33236761-33244774 Setaria italica
Seita.1G257700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33239775-33244774 Setaria italica
Seita.1G257700 5.0kb downstream 5.0kb downstream 8014 true scaffold_1: 33231761-33239774 Setaria italica
Seita.1G257700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33231761-33236760 Setaria italica
Seita.1G257700 10.0kb upstream 10.0kb upstream 13014 true scaffold_1: 33236761-33249774 Setaria italica
Seita.1G257700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33239775-33249774 Setaria italica
Seita.1G257700 10.0kb downstream 10.0kb downstream 13014 true scaffold_1: 33226761-33239774 Setaria italica
Seita.1G257700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33226761-33236760 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040980 5273 Angiosperm View MSA
122184259 5267 Panicoideae View MSA
124584130 5269 Grass View MSA
121345878 5274 Embryophyte View MSA
123423763 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.044       Low
cufflinks 14.597     High  
cufflinks 14.781     High  
cufflinks 12.894     High  
cufflinks 15.56     High  
cufflinks 13.05        
cufflinks 19.839     High  
cufflinks 42.257     High High
cufflinks 23.893     High  
cufflinks 48.005     High High
cufflinks 23.063     High  
cufflinks 17.584     High  
cufflinks 12.863        
cufflinks 31.53     High High
cufflinks 15.61     High  
cufflinks 11.463       Low
cufflinks 20.196     High  
cufflinks 11.388     High Low
cufflinks 20.794     High  
cufflinks 19.597     High  

0 Strain