Gene : Seita.1G259900 S. italica v2.2
Defline:  (1 of 3) PTHR19139:SF134 - AQUAPORIN TIP2-3-RELATED Genomic Order:  2599
Name:  ? Seita.1G259900 Secondary Identifier:  ? PAC:32697409
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G259900 0.5kb upstream 0.5kb upstream 1642 true scaffold_1: 33381748-33383389 Setaria italica
Seita.1G259900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33382890-33383389 Setaria italica
Seita.1G259900 0.5kb downstream 0.5kb downstream 1642 true scaffold_1: 33381248-33382889 Setaria italica
Seita.1G259900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33381248-33381747 Setaria italica
Seita.1G259900 1.0kb upstream 1.0kb upstream 2142 true scaffold_1: 33381748-33383889 Setaria italica
Seita.1G259900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33382890-33383889 Setaria italica
Seita.1G259900 1.0kb downstream 1.0kb downstream 2142 true scaffold_1: 33380748-33382889 Setaria italica
Seita.1G259900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33380748-33381747 Setaria italica
Seita.1G259900 2.0kb upstream 2.0kb upstream 3142 true scaffold_1: 33381748-33384889 Setaria italica
Seita.1G259900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33382890-33384889 Setaria italica
Seita.1G259900 2.0kb downstream 2.0kb downstream 3142 true scaffold_1: 33379748-33382889 Setaria italica
Seita.1G259900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33379748-33381747 Setaria italica
Seita.1G259900 5.0kb upstream 5.0kb upstream 6142 true scaffold_1: 33381748-33387889 Setaria italica
Seita.1G259900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33382890-33387889 Setaria italica
Seita.1G259900 5.0kb downstream 5.0kb downstream 6142 true scaffold_1: 33376748-33382889 Setaria italica
Seita.1G259900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33376748-33381747 Setaria italica
Seita.1G259900 10.0kb upstream 10.0kb upstream 11142 true scaffold_1: 33381748-33392889 Setaria italica
Seita.1G259900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33382890-33392889 Setaria italica
Seita.1G259900 10.0kb downstream 10.0kb downstream 11142 true scaffold_1: 33371748-33382889 Setaria italica
Seita.1G259900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33371748-33381747 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192931 5267 Panicoideae View MSA
124584121 5269 Grass View MSA
122045007 5273 Angiosperm View MSA
121351438 5274 Embryophyte View MSA
123428679 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.892     High  
cufflinks 7.708        
cufflinks 0.623       Low
cufflinks 1.234       Low
cufflinks 1.481       Low
cufflinks 7.807        
cufflinks 6.279        
cufflinks 12.883        
cufflinks 3.994        
cufflinks 327.63     High High
cufflinks 81.119     High  
cufflinks 161.873     High  
cufflinks 486.309     High High
cufflinks 2.035        
cufflinks 487.302     High High
cufflinks 3.914        
cufflinks 327.388     High High
cufflinks 1.263       Low
cufflinks 2.162        
cufflinks 612.948     High High

0 Strain