Gene : Seita.1G258500 S. italica v2.2
Defline:  (1 of 1) 2.7.1.138 - Ceramide kinase / Acylsphingosine kinase Genomic Order:  2585
Name:  ? Seita.1G258500 Secondary Identifier:  ? PAC:32695853
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5129 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G258500 0.5kb upstream 0.5kb upstream 7446 true scaffold_1: 33280036-33287481 Setaria italica
Seita.1G258500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33286982-33287481 Setaria italica
Seita.1G258500 0.5kb downstream 0.5kb downstream 7446 true scaffold_1: 33279536-33286981 Setaria italica
Seita.1G258500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33279536-33280035 Setaria italica
Seita.1G258500 1.0kb upstream 1.0kb upstream 7946 true scaffold_1: 33280036-33287981 Setaria italica
Seita.1G258500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33286982-33287981 Setaria italica
Seita.1G258500 1.0kb downstream 1.0kb downstream 7946 true scaffold_1: 33279036-33286981 Setaria italica
Seita.1G258500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33279036-33280035 Setaria italica
Seita.1G258500 2.0kb upstream 2.0kb upstream 8946 true scaffold_1: 33280036-33288981 Setaria italica
Seita.1G258500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33286982-33288981 Setaria italica
Seita.1G258500 2.0kb downstream 2.0kb downstream 8946 true scaffold_1: 33278036-33286981 Setaria italica
Seita.1G258500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33278036-33280035 Setaria italica
Seita.1G258500 5.0kb upstream 5.0kb upstream 11946 true scaffold_1: 33280036-33291981 Setaria italica
Seita.1G258500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33286982-33291981 Setaria italica
Seita.1G258500 5.0kb downstream 5.0kb downstream 11946 true scaffold_1: 33275036-33286981 Setaria italica
Seita.1G258500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33275036-33280035 Setaria italica
Seita.1G258500 10.0kb upstream 10.0kb upstream 16946 true scaffold_1: 33280036-33296981 Setaria italica
Seita.1G258500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33286982-33296981 Setaria italica
Seita.1G258500 10.0kb downstream 10.0kb downstream 16946 true scaffold_1: 33270036-33286981 Setaria italica
Seita.1G258500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33270036-33280035 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188498 5267 Panicoideae View MSA
124580851 5269 Grass View MSA
122045057 5273 Angiosperm View MSA
121345163 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.993        
cufflinks 4.367       High
cufflinks 3.83        
cufflinks 2.542       Low
cufflinks 2.658        
cufflinks 5.072       High
cufflinks 2.992        
cufflinks 3.963        
cufflinks 2.288       Low
cufflinks 2.628        
cufflinks 3.695        
cufflinks 2.958        
cufflinks 2.941        
cufflinks 3.904        
cufflinks 3.353        
cufflinks 3.49        
cufflinks 3.377        
cufflinks 3.055        
cufflinks 2.054       Low
cufflinks 3.351        

0 Strain