Gene : Seita.1G263500 S. italica v2.2
Defline:  (1 of 3) 1.11.1.12//1.11.1.9 - Phospholipid-hydroperoxide glutathione peroxidase / Peroxidation-inhibiting protein Genomic Order:  2635
Name:  ? Seita.1G263500 Secondary Identifier:  ? PAC:32694553
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica DETOX1-PWY-1 Setaria italica pathologic  
Sitalica PWY-4081 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G263500 0.5kb upstream 0.5kb upstream 3127 true scaffold_1: 33748355-33751481 Setaria italica
Seita.1G263500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33748355-33748854 Setaria italica
Seita.1G263500 0.5kb downstream 0.5kb downstream 3127 true scaffold_1: 33748855-33751981 Setaria italica
Seita.1G263500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33751482-33751981 Setaria italica
Seita.1G263500 1.0kb upstream 1.0kb upstream 3627 true scaffold_1: 33747855-33751481 Setaria italica
Seita.1G263500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33747855-33748854 Setaria italica
Seita.1G263500 1.0kb downstream 1.0kb downstream 3627 true scaffold_1: 33748855-33752481 Setaria italica
Seita.1G263500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33751482-33752481 Setaria italica
Seita.1G263500 2.0kb upstream 2.0kb upstream 4627 true scaffold_1: 33746855-33751481 Setaria italica
Seita.1G263500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33746855-33748854 Setaria italica
Seita.1G263500 2.0kb downstream 2.0kb downstream 4627 true scaffold_1: 33748855-33753481 Setaria italica
Seita.1G263500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33751482-33753481 Setaria italica
Seita.1G263500 5.0kb upstream 5.0kb upstream 7627 true scaffold_1: 33743855-33751481 Setaria italica
Seita.1G263500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33743855-33748854 Setaria italica
Seita.1G263500 5.0kb downstream 5.0kb downstream 7627 true scaffold_1: 33748855-33756481 Setaria italica
Seita.1G263500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33751482-33756481 Setaria italica
Seita.1G263500 10.0kb upstream 10.0kb upstream 12627 true scaffold_1: 33738855-33751481 Setaria italica
Seita.1G263500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33738855-33748854 Setaria italica
Seita.1G263500 10.0kb downstream 10.0kb downstream 12627 true scaffold_1: 33748855-33761481 Setaria italica
Seita.1G263500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33751482-33761481 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188248 5267 Panicoideae View MSA
124583116 5269 Grass View MSA
122049273 5273 Angiosperm View MSA
121349724 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.317       Low
cufflinks 9.129        
cufflinks 10.94     High  
cufflinks 9.936        
cufflinks 10.208        
cufflinks 7.621        
cufflinks 9.057        
cufflinks 27.865     High High
cufflinks 8.575        
cufflinks 21.274     High High
cufflinks 9.918        
cufflinks 15.616     High  
cufflinks 13.972     High  
cufflinks 18.745     High  
cufflinks 9.744        
cufflinks 8.803        
cufflinks 18.728     High  
cufflinks 4.434       Low
cufflinks 21.476     High High
cufflinks 18.782     High  

0 Strain