Gene : Seita.1G262100 S. italica v2.2
Defline:  (1 of 21) PF14144 - Seed dormancy control (DOG1) Genomic Order:  2621
Name:  ? Seita.1G262100 Secondary Identifier:  ? PAC:32694235
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G262100 0.5kb upstream 0.5kb upstream 5500 true scaffold_1: 33619615-33625114 Setaria italica
Seita.1G262100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33624615-33625114 Setaria italica
Seita.1G262100 0.5kb downstream 0.5kb downstream 5500 true scaffold_1: 33619115-33624614 Setaria italica
Seita.1G262100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33619115-33619614 Setaria italica
Seita.1G262100 1.0kb upstream 1.0kb upstream 6000 true scaffold_1: 33619615-33625614 Setaria italica
Seita.1G262100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33624615-33625614 Setaria italica
Seita.1G262100 1.0kb downstream 1.0kb downstream 6000 true scaffold_1: 33618615-33624614 Setaria italica
Seita.1G262100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33618615-33619614 Setaria italica
Seita.1G262100 2.0kb upstream 2.0kb upstream 7000 true scaffold_1: 33619615-33626614 Setaria italica
Seita.1G262100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33624615-33626614 Setaria italica
Seita.1G262100 2.0kb downstream 2.0kb downstream 7000 true scaffold_1: 33617615-33624614 Setaria italica
Seita.1G262100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33617615-33619614 Setaria italica
Seita.1G262100 5.0kb upstream 5.0kb upstream 10000 true scaffold_1: 33619615-33629614 Setaria italica
Seita.1G262100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33624615-33629614 Setaria italica
Seita.1G262100 5.0kb downstream 5.0kb downstream 10000 true scaffold_1: 33614615-33624614 Setaria italica
Seita.1G262100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33614615-33619614 Setaria italica
Seita.1G262100 10.0kb upstream 10.0kb upstream 15000 true scaffold_1: 33619615-33634614 Setaria italica
Seita.1G262100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33624615-33634614 Setaria italica
Seita.1G262100 10.0kb downstream 10.0kb downstream 15000 true scaffold_1: 33609615-33624614 Setaria italica
Seita.1G262100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33609615-33619614 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026418 5273 Angiosperm View MSA
122188151 5267 Panicoideae View MSA
124569900 5269 Grass View MSA
121296320 5274 Embryophyte View MSA
123334502 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.118     Low  
cufflinks 0.143        
cufflinks 0.082        
cufflinks 0.086     Low  
cufflinks 0.088        
cufflinks 0.248       High
cufflinks 0.162        
cufflinks 0.22       High
cufflinks 0.14        
cufflinks 0.188     Low High
cufflinks 0.106     Low  
cufflinks 0.091     Low  
cufflinks 0.087     Low  
cufflinks 0.073     Low Low
cufflinks 0.088     Low  
cufflinks 0.131        
cufflinks 0.136        
cufflinks 0.085     Low  
cufflinks 0.069     Low Low
cufflinks 0.086     Low  

0 Strain