Gene : Seita.1G265700 S. italica v2.2
Defline:  (1 of 1) PTHR13505:SF7 - TRANSMEMBRANE PROTEIN 208 Genomic Order:  2657
Name:  ? Seita.1G265700 Secondary Identifier:  ? PAC:32697908
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G265700 0.5kb upstream 0.5kb upstream 3152 true scaffold_1: 33895521-33898672 Setaria italica
Seita.1G265700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33898173-33898672 Setaria italica
Seita.1G265700 0.5kb downstream 0.5kb downstream 3152 true scaffold_1: 33895021-33898172 Setaria italica
Seita.1G265700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33895021-33895520 Setaria italica
Seita.1G265700 1.0kb upstream 1.0kb upstream 3652 true scaffold_1: 33895521-33899172 Setaria italica
Seita.1G265700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33898173-33899172 Setaria italica
Seita.1G265700 1.0kb downstream 1.0kb downstream 3652 true scaffold_1: 33894521-33898172 Setaria italica
Seita.1G265700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33894521-33895520 Setaria italica
Seita.1G265700 2.0kb upstream 2.0kb upstream 4652 true scaffold_1: 33895521-33900172 Setaria italica
Seita.1G265700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33898173-33900172 Setaria italica
Seita.1G265700 2.0kb downstream 2.0kb downstream 4652 true scaffold_1: 33893521-33898172 Setaria italica
Seita.1G265700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33893521-33895520 Setaria italica
Seita.1G265700 5.0kb upstream 5.0kb upstream 7652 true scaffold_1: 33895521-33903172 Setaria italica
Seita.1G265700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33898173-33903172 Setaria italica
Seita.1G265700 5.0kb downstream 5.0kb downstream 7652 true scaffold_1: 33890521-33898172 Setaria italica
Seita.1G265700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33890521-33895520 Setaria italica
Seita.1G265700 10.0kb upstream 10.0kb upstream 12652 true scaffold_1: 33895521-33908172 Setaria italica
Seita.1G265700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33898173-33908172 Setaria italica
Seita.1G265700 10.0kb downstream 10.0kb downstream 12652 true scaffold_1: 33885521-33898172 Setaria italica
Seita.1G265700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33885521-33895520 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175679 5267 Panicoideae View MSA
124576898 5269 Grass View MSA
122042916 5273 Angiosperm View MSA
121345571 5274 Embryophyte View MSA
123425325 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.986        
cufflinks 15.751     High High
cufflinks 6.264        
cufflinks 5.377        
cufflinks 4.688       Low
cufflinks 13.876     High High
cufflinks 6.924        
cufflinks 7.964        
cufflinks 7.593        
cufflinks 6.022        
cufflinks 7.865        
cufflinks 7.592        
cufflinks 7.779        
cufflinks 7.005        
cufflinks 12.363       High
cufflinks 4.392       Low
cufflinks 10.196        
cufflinks 3.93       Low
cufflinks 6.215        
cufflinks 9.678        

0 Strain