Gene : Seita.1G265900 S. italica v2.2
Defline:  (1 of 1) PTHR13675:SF0 - LYR MOTIF-CONTAINING PROTEIN 2 Genomic Order:  2659
Name:  ? Seita.1G265900 Secondary Identifier:  ? PAC:32694813
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G265900 0.5kb upstream 0.5kb upstream 1100 true scaffold_1: 33901124-33902223 Setaria italica
Seita.1G265900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33901724-33902223 Setaria italica
Seita.1G265900 0.5kb downstream 0.5kb downstream 1100 true scaffold_1: 33900624-33901723 Setaria italica
Seita.1G265900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33900624-33901123 Setaria italica
Seita.1G265900 1.0kb upstream 1.0kb upstream 1600 true scaffold_1: 33901124-33902723 Setaria italica
Seita.1G265900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33901724-33902723 Setaria italica
Seita.1G265900 1.0kb downstream 1.0kb downstream 1600 true scaffold_1: 33900124-33901723 Setaria italica
Seita.1G265900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33900124-33901123 Setaria italica
Seita.1G265900 2.0kb upstream 2.0kb upstream 2600 true scaffold_1: 33901124-33903723 Setaria italica
Seita.1G265900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33901724-33903723 Setaria italica
Seita.1G265900 2.0kb downstream 2.0kb downstream 2600 true scaffold_1: 33899124-33901723 Setaria italica
Seita.1G265900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33899124-33901123 Setaria italica
Seita.1G265900 5.0kb upstream 5.0kb upstream 5600 true scaffold_1: 33901124-33906723 Setaria italica
Seita.1G265900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33901724-33906723 Setaria italica
Seita.1G265900 5.0kb downstream 5.0kb downstream 5600 true scaffold_1: 33896124-33901723 Setaria italica
Seita.1G265900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33896124-33901123 Setaria italica
Seita.1G265900 10.0kb upstream 10.0kb upstream 10600 true scaffold_1: 33901124-33911723 Setaria italica
Seita.1G265900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33901724-33911723 Setaria italica
Seita.1G265900 10.0kb downstream 10.0kb downstream 10600 true scaffold_1: 33891124-33901723 Setaria italica
Seita.1G265900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33891124-33901123 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028538 5273 Angiosperm View MSA
122175069 5267 Panicoideae View MSA
124578184 5269 Grass View MSA
121346183 5274 Embryophyte View MSA
123425474 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.621        
cufflinks 3.895        
cufflinks 1.182        
cufflinks 1.345        
cufflinks 0.793       Low
cufflinks 2.219        
cufflinks 1.603        
cufflinks 3.95        
cufflinks 2.294        
cufflinks 3.754        
cufflinks 1.807        
cufflinks 5.253       High
cufflinks 2.403        
cufflinks 2.164        
cufflinks 4.792       High
cufflinks 0.826       Low
cufflinks 6.392       High
cufflinks 0.342       Low
cufflinks 0.966        
cufflinks 5.874       High

0 Strain